Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059996.1:31982699-31984711[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.26 15 6.4 0.8 1 23 325 347 325 347 0.96

2 9 0.00079 0.044 14.4 1.0 1 23 353 376 353 376 0.94

3 9 3.4e-05 0.0019 18.7 0.1 1 23 385 410 385 410 0.96

4 9 0.00014 0.008 16.7 0.2 3 23 425 445 424 445 0.94

5 9 2.6e-05 0.0015 19.0 3.7 1 23 451 473 451 473 0.99

6 9 0.014 0.77 10.5 0.6 1 23 479 501 479 501 0.97

7 9 1.3e-05 0.00072 20.0 0.3 1 23 506 529 506 529 0.97

8 9 4.6e-06 0.00025 21.4 3.1 1 23 535 557 535 557 0.98

9 9 2.8e-06 0.00016 22.1 0.1 3 23 565 585 563 585 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.26	15	6.4	0.8	1	23	325	347	325	347	0.96
2	9	0.00079	0.044	14.4	1.0	1	23	353	376	353	376	0.94
3	9	3.4e-05	0.0019	18.7	0.1	1	23	385	410	385	410	0.96
4	9	0.00014	0.008	16.7	0.2	3	23	425	445	424	445	0.94
5	9	2.6e-05	0.0015	19.0	3.7	1	23	451	473	451	473	0.99
6	9	0.014	0.77	10.5	0.6	1	23	479	501	479	501	0.97
7	9	1.3e-05	0.00072	20.0	0.3	1	23	506	529	506	529	0.97
8	9	4.6e-06	0.00025	21.4	3.1	1	23	535	557	535	557	0.98
9	9	2.8e-06	0.00016	22.1	0.1	3	23	565	585	563	585	0.96

Sequence Information

Coding Sequence: ATGGATACATCAAATGTATCTCGTGACAAGCATTGTCAGGCTTGTCTTCAGCAATCCAgccatcaaatgtattcattaacttcaaataatttcacatttgatggTGTTGAACAAACACTCGCTGACATCTACTATCAGTGTACACAGTTGGTTGCCGAAACagaacaattcaattcacgCTTTGGCTGGGTTTGTCTCAGTTGCTTCGAgaaattgatcgatttttttcaattccgtAAAATGTGCATCGATTCATTCAACACACTTAAGGAGACTAAATTGCCAACATCTGCCTTCAAAGTGGAAATGGTTGATATATGTGAAGATATGGCTATTTACACCGAGCCATATGATGACAATGTTAAGAATGATGAAGACAGTTTTAACCATGAATACGAAATATCCATTGATAAAATGGATTACAATCCAACCGATGATTTCAGTCTGGAAATTCAAAAGGTGGAACCAGTTGATGATTTGGCCAAAGTAAAGGGCTGTGATAAACATAATACGACAATGTCTGTGGATGAAAACATTATTAGAGAACGACCGAGTTCagaagatgaagatgaagatAGAGATGATGATGTTGAGGACCAGGAAGACCGCGAAGACGATGAAGACGAGGAAGATGAGGAGGTGAAGAAAGATACTACAATCGATCAAGACAATGTTAAGacacaaaatcaacattcaaaatctGGATGCAATAATAAAGTTAAACATGGTATTACGAATTCCAATACATTGGTTACAGCAATCaaagaaattaaaatcgataaaaaaggAATCAGAGCAACGGCACGCATGTACAACATTCCCAGGAGTAGCCTATGTCGATATATCAATAAACTGGACGAAACCATTCCGGACGTTGCTGCAGTTGAAGATGCTgaattattaaaaatggttcGCAAGATTGCTTCGACAAAACCTTCTATAAATCTTAAACGAAATCTACCCGAACCAAAATACGCGTGTGAGGTATGTCCAGCGCGATTTTTCAAGAAACTCCGTTACGATGCACACAAGCGAAAGCATTTAGGTCTGAGCCAATACAAATGTCAGTATTGCGAAAAAGGATATGAAAAGTCTTTCACATTGAGAATGCATATAGCCGCAAAACATGCCGATTCAGCCGAAAAACCAGTATTTATATGTGATATTGGTGGCTGTGGAAAATCGTATTCCGCAAAGGATTCCCTTTTAACCCACATGAAACGGATCCATTTTGGGGAAAAACTGGAACGACAAACGGGAGCCCGGAAAATATGCGAGCAATGtggaaaaacattcaaagatAATGTGGCACTTGTTACACACTCCTATTCACATAGCAAGGTGACCCCGTTCAAATGTCACATATGCTCAAAAATGCTTACCACTAGCAAATCATTGAAAGTGCATCTAATGCGACACGACGGAATCAAAAATTTCGTGTGTCCAATTTGTGGTTTACGAAAAATAACGGGTCATGAACTGCGAATGCATATGAAATACCATGCTGATCTTCAGTTTCCGTGTGAGCTGTGCTCGTCAGTGTTTACACGAGCTGAGAATATGAAAAGGCACATGAAAGTCGTTCACTGTGGCGTCAAAGCATACCCGTGTACGCATTGCGATCGATCTTTTGGAAAAGCGGAAACATTAAAGCATCATATCATGACACACACCGGTGAAAAGCCGTTAGCTTGCTCGGTTTGCGATAAGAGATTCATTCAACCCGTTGCACTCAAAAGACATCTGAAAGTTCAcagtaaaattaaatga
Protein Sequence: MDTSNVSRDKHCQACLQQSSHQMYSLTSNNFTFDGVEQTLADIYYQCTQLVAETEQFNSRFGWVCLSCFEKLIDFFQFRKMCIDSFNTLKETKLPTSAFKVEMVDICEDMAIYTEPYDDNVKNDEDSFNHEYEISIDKMDYNPTDDFSLEIQKVEPVDDLAKVKGCDKHNTTMSVDENIIRERPSSEDEDEDRDDDVEDQEDREDDEDEEDEEVKKDTTIDQDNVKTQNQHSKSGCNNKVKHGITNSNTLVTAIKEIKIDKKGIRATARMYNIPRSSLCRYINKLDETIPDVAAVEDAELLKMVRKIASTKPSINLKRNLPEPKYACEVCPARFFKKLRYDAHKRKHLGLSQYKCQYCEKGYEKSFTLRMHIAAKHADSAEKPVFICDIGGCGKSYSAKDSLLTHMKRIHFGEKLERQTGARKICEQCGKTFKDNVALVTHSYSHSKVTPFKCHICSKMLTTSKSLKVHLMRHDGIKNFVCPICGLRKITGHELRMHMKYHADLQFPCELCSSVFTRAENMKRHMKVVHCGVKAYPCTHCDRSFGKAETLKHHIMTHTGEKPLACSVCDKRFIQPVALKRHLKVHSKIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -