Aaph001927.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidoletes aphidimyza
Gene Symbol
-
Assembly
GCA_030463065.1
Location
CM059996.1:23710313-23713444[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0017 0.096 13.3 1.8 1 23 52 74 52 74 0.98
2 16 0.37 21 6.0 0.1 1 23 80 103 80 103 0.84
3 16 0.0095 0.53 11.0 3.4 1 23 106 129 106 129 0.97
4 16 0.017 0.94 10.2 0.3 3 19 139 155 138 155 0.97
5 16 5.6e-05 0.0031 18.0 0.8 1 23 166 188 166 188 0.98
6 16 0.024 1.4 9.7 2.0 3 23 196 216 194 216 0.95
7 16 0.00035 0.02 15.5 1.2 1 23 222 244 222 244 0.95
8 16 0.00011 0.006 17.1 0.6 1 23 528 551 528 551 0.97
9 16 0.0041 0.23 12.1 5.5 1 21 563 583 563 585 0.95
10 16 1.5 86 4.0 3.9 1 23 593 616 593 616 0.95
11 16 0.029 1.6 9.5 2.7 2 23 621 643 620 643 0.96
12 16 0.004 0.22 12.2 0.1 1 19 655 673 655 676 0.91
13 16 0.0012 0.069 13.8 0.8 1 23 684 708 684 708 0.98
14 16 5.7e-05 0.0031 18.0 2.8 1 23 714 736 714 736 0.98
15 16 2.4e-05 0.0013 19.2 1.4 1 23 742 764 742 764 0.97
16 16 0.0057 0.32 11.7 2.0 3 23 772 792 770 792 0.98

Sequence Information

Coding Sequence
atggttcgaaaaaATCGTCAgcaaaaaaactcaaaaattaaaacggaATCAACATGTTCAAAAATCGACATAAATAAAAGTGATGACAATGAAGCtgcaaatgaagcaaataCATCTGAAAATATAGTCGTTACGTCCGATGACAAGACAAGATTTTCGTGTACGGTTTGCGATCAATTATTCAAGTACGAAACGGGACTGAAGAAGCATAAACTACGACACAAGCCCCCTGGTGGTTTCGTTTGCTCTGAATGCAATGCACGATTTGTAACGGATGCTGAGCGCTTATTGCACAAAGAAGTTGTTCACAAGATTTTCAAGTGTATGATTTGTCATGAAAAATGCACATCTGAAGaagcattttcaaatcatataAATAGTTTACACGATGGTCGAGATCGTGAATTCGTGTTTTGCGCAGATTGTGGAGCTCAGTTCAGGCAGAAAAATCAACTTAGATTACACTGTGAATCGAAATGCGGAACACTTCGTTGCTACACATGCAACCAATGTGATTCAAAATTTATGACACAAAACACGTTAAACGCGCATATGCTCATTCACActggcgaaaaaaaacatttgtgcaatttttgcGGGAACAGTTTTTTAAGCCGGGGACAGCTAAAAATTCATGAACGAAGTCACACTAAAGAAAAACCATATAAGTGTTTGGTCTGTAATAAGGCGTTTGCTCATCGCGAGAGTTTGGTAACGCATTCATCACTTCACACGGGAATCAAACCATACAAATGTGAGTGCTGCTGTAGTCAATTTTCGTGCATTGGAAACTTGATAAAGCATCGACGGATTCGGCCACAAACATGTGGATTGCCAAAATACTCGAATGTTAAATGCGCTCCGCGAGCAAGCACAAAAGTACCGGGAAgtttaacaataaaaaaagaacgtGTGGTTAAACGATCTTATGCAAAGCGTAAAGTAATAGCTGTGCCAGAGCTGTTATCAGAACGTGCTGAACTGACTGGTCAATTCGATAATACCAAAGTCGAACCGGATGATGAAAGTCAAGAGTTTGCCGAGTACTtaattttgaacaaacaaaaaccagatGACGTTTACGAGTCtacaaatttgattaaaagtGATGAGGATGAAATTGAACCACAAACTGGAAATTTGGAATTATTAAATTCACCACCAAGTGGCACCATATCTTATAATATCCCGAAGAGCAGTGTGCTGGTTCTGACAGCTGATGGCAATTACATGATTGCGAATTTAGATAATGATGTAAAGCAGCCACATGAAATTCGTTCGCCACCACCGCAAGTTGAACAAATTATAATATTGAATAGTAGCGATTTGCAATTTGCCGAAATGGAGGTCGACGGTCAAGCAAATGATCGAGTTATTGATGAAAACGGGAGCGTAGCAGTCTTACATACAACAACGTCATCAACAGATCCAATTTCTGGTGATGATCAAATAGATGAACTTGTTGAACCGCAATACGTCGAAAATAGCATTCAACATTTGGAAATTGTGCCAGCCGAAGCGGAAATTGATGGATTAATTAATAAAACCGAAGACACAAATAACTCACACACTTCGGAAATATTCGAGTGTGAGGTGTGCCTGAAACCCTTCAAGCAAGAAAAAACGCTGATCAAGCATTTGGACACTAAACATAACATTGAATGCGACTTCATAAAAAAAGAGTggtttaaatgtaaatattgttaCAAGCAGTATTCAAAAGAGAGTTTACTGAATAAGCACATTCTGTGTCATGGTACAAATGGTGAACTCCGTTACAAATGCTCTTGCTGCACTAGATATTTTGATACTAAAGAGAAAATGCAAGAGCACGCTTTAAAAGAGCATGAAGatcgattgaaatgcaatttctgtaataaaatttacaaagaACTTGACTGCAAAACGGCTCACATTCGAAAGGTGCATATGAAGACTGGTGCACCGCAAAAACGTTACACATTTGTATGTTCAAGATGTGGAAAGAAGTTCAATTCACGTGTTGCTTTGGGTGATCATGAGCAAGCTGACTGTGGCCGAATGCCACTATACAAATGTGATTATGAAAATTGTGGAAAATCGTTGCATAGTTTGGGATCgttgaaaattcatcaattgatACACACGGGCCATTTGCCATattcatgtaatttttgtaaGAAAAAATTCCGCACACAAGGTCAGGTGAAAGTGCATGAGCGCAGCCACAACGGTGACAAACCATTTAAATGTAATCAATGCCCGAAGGCATTCGCTCACCGTGAAAGCTTATTGACCCATTTATCTTTGCACACCGGACTGAAACGATTTGGTTGTCAAGGTTGCGGAAGTCGATTCTCTTGTATCTCCAATTTGCAAGCCCATCGACGAACCCATCAAAATACCTGCGGTCAATTGCCACTCGACACAAGAGCACAATACTCCTACAATGTTGACGATGGCATTGTCAATTCCACAAACGCAACTAGTTAA
Protein Sequence
MVRKNRQQKNSKIKTESTCSKIDINKSDDNEAANEANTSENIVVTSDDKTRFSCTVCDQLFKYETGLKKHKLRHKPPGGFVCSECNARFVTDAERLLHKEVVHKIFKCMICHEKCTSEEAFSNHINSLHDGRDREFVFCADCGAQFRQKNQLRLHCESKCGTLRCYTCNQCDSKFMTQNTLNAHMLIHTGEKKHLCNFCGNSFLSRGQLKIHERSHTKEKPYKCLVCNKAFAHRESLVTHSSLHTGIKPYKCECCCSQFSCIGNLIKHRRIRPQTCGLPKYSNVKCAPRASTKVPGSLTIKKERVVKRSYAKRKVIAVPELLSERAELTGQFDNTKVEPDDESQEFAEYLILNKQKPDDVYESTNLIKSDEDEIEPQTGNLELLNSPPSGTISYNIPKSSVLVLTADGNYMIANLDNDVKQPHEIRSPPPQVEQIIILNSSDLQFAEMEVDGQANDRVIDENGSVAVLHTTTSSTDPISGDDQIDELVEPQYVENSIQHLEIVPAEAEIDGLINKTEDTNNSHTSEIFECEVCLKPFKQEKTLIKHLDTKHNIECDFIKKEWFKCKYCYKQYSKESLLNKHILCHGTNGELRYKCSCCTRYFDTKEKMQEHALKEHEDRLKCNFCNKIYKELDCKTAHIRKVHMKTGAPQKRYTFVCSRCGKKFNSRVALGDHEQADCGRMPLYKCDYENCGKSLHSLGSLKIHQLIHTGHLPYSCNFCKKKFRTQGQVKVHERSHNGDKPFKCNQCPKAFAHRESLLTHLSLHTGLKRFGCQGCGSRFSCISNLQAHRRTHQNTCGQLPLDTRAQYSYNVDDGIVNSTNATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-