Aaph000361.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidoletes aphidimyza
Gene Symbol
-
Assembly
GCA_030463065.1
Location
CM059996.1:4765865-4771990[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00083 0.046 14.3 0.0 2 23 218 239 217 239 0.97
2 13 0.0031 0.17 12.5 1.5 1 23 246 268 246 268 0.97
3 13 7.1 3.9e+02 2.0 0.8 1 12 275 286 275 289 0.82
4 13 3.5e-06 0.00019 21.8 3.8 1 23 513 535 513 535 0.98
5 13 1.6e-05 0.00089 19.7 1.4 2 23 542 563 541 563 0.97
6 13 0.2 11 6.9 2.2 1 23 574 597 574 597 0.96
7 13 8.8e-06 0.00049 20.5 0.8 1 23 605 628 605 628 0.98
8 13 1.1 64 4.4 4.4 1 16 634 648 634 658 0.78
9 13 8.9e-05 0.0049 17.4 2.6 1 23 664 686 664 686 0.98
10 13 1.6e-05 0.00086 19.8 1.6 1 23 692 714 692 714 0.98
11 13 1.8e-05 0.001 19.6 4.1 1 23 720 744 720 744 0.98
12 13 0.00017 0.0097 16.4 0.3 3 23 752 773 751 773 0.97
13 13 0.00027 0.015 15.8 0.7 1 23 779 802 779 802 0.95

Sequence Information

Coding Sequence
ATGTTAGTTGATAAATTTTTTAGCGGACTTAATAATGAAGATTTTGAACAGTTTTCACAACGGACTACCTGGTCAGAGGAACAGCTTCTTGAATTTgttaaagaaaagaaatggtTTTCCCATATGAGCAATGAAGACAACGACATTGACActgcaaacaattcaattcctCTGCAGGTGGAAAGGATTGTGACTAAGGACGAAATTTCAAGCGAATATTCTGACAATAATCCTGTCAATTCTAATGACGATCAAGTGTTATGCCACAGTGGAAGTGAATTTGATACGAAAATTCATGCCGACCGTGATGTTAATGATGCCAACTACCAAGAAATTGTAGAGGATACTTTTAGGGATACTCGCATAGGAATAGTCAAGAGTGAGAATGTTCCAGTTGATAACACCCCTTTACCGCAAGGTGCTGTACCTTCGAATCACAATGTCAAGAATTTTGTTATTCGCGTAAAACCAGTATTAAAATCAAACAGAACCAAACAGGACAAACAACAACGGTTGGAAGTGCACATGCGAAAGCATGAACATATGAATAAAACATTCGAATGTCATCTGTGCCGTATGCAACATCATCGGATGCTGGGTTTGAAAGTACATTTCAGTCGAATGCATGTCGGAATTAAGAAAGAAAGACTACCATGTCCGGAATGTGAGAAAACTTTCTTAGAACAAGCCGCATTAGATCGTCATATTCGAATACACAAGGGATTGGCCGAGGTGTATAAATGTCCCGATTGCAATAAAGAGTTTGAACTGCGTTGTCGAATGATGGCTCACCTGGCACGTCATTCTAATACAAAGGAAGAGCATATCTGTGAAATTTGCGGTCAAATCTATGGATCTCaATGTTATCAAATACCATCCGAATCAGTGCTTGAACATCGGaagacattttatttgtcacaaaaagaaaatactgAATCAAATCTGGAATGGTTCGGCCGTGCTCAACAGCTGATCGATGGttgtgatttcattgatttggcTGAGTTTTTGttaattgataaatttatttgtacgCTGCAAAAGGAGTCAGTTGAAAAACTAAGAGCTTTGCAAATATCTTCATCGAATTGTTTATATGACAGTTTGGCAAATGACAGCATCAATACTGAAACAAATAATGAGAATGAAGGAGATTATAAGCCGGATATTATTGTGGATGAAGAATCAAAAGTGGAAACTGCGTTACTAATTGACAACAACACCAAAGATGAAAATGCTGAGCGTCCAGTTAATCTCCTAGAATTAAAATCCGAACCAAATCCTGAGCCGGAAATTGTTGAGCCGTTTGAAAATGATCTTGATGATGATGTACCATTTTTTAACACAAATGTTGAGAGTATTAATTCAGAAGATGACCAAAAATTGTCTGATTTAAAATGCCAAATtaagaaaaaggaaaacaaaaatgaagatatTTTACTCAATACGCCGAGCATGGagaaaaaatccgaaaaattaaaatccatcAAATCAGGGCAAAAGATCAAAGGTTTCACAATAGACGCAGAAGACCGGTATCATTGTTTGGACTGTGGAAAAAGTTTCAAACAAAAGGCCTCATACACTCAACATCAACGATTACACAGTGGTAAAAATTTGCTATATTGCACGATATGCAACAAAGTGTTCATTAAACCGAGCAAATTAAAACTTCACTTTCGCAAACATGAGCGTGAACAAAGTGTTGCTGGTAAATCGTTCGAGTGTCATTTGTGTAAATTCCAATTTCTACGTCTGCAAGGACTCCGGATTCATATTAATCTGAAGCATgtttcaaatatcaaaaacaGCTTCCAGTGTAGATATTGTGATGAAGTATTTACACAGCAAACAACATTAGATGATCATCTTCGTTCGGAACATCAACTGAATATTGGGCATAAATGTCCACATTGCAACAAGTTGTTTGACCAAGACCAACTGTTGGACTTAAAAGAGCATCTGACAACACATTCAGAGATTAAACCGTTTATGTGTGAGGTGTGTGGAAATGCATTTAAGACTCGCAAGCAACTGCACATGCACATGACCCGGCATACAAACGAAAGAAGgTTCAAGTGTGGTGAATGCGGTCAGATGCTAAAATCTCGTTCAAATTATAAGAATCATTTAAGGCAACATACAGGTGAACGTCCATTTAAATGTGACCATGATCATTGCGGGAAAACATTTGTGCAACGAGCAAATTACTTGAAACATTTGAGATGGCACACGGGTATCAAACCACACGGTTGCAACTACTGCAATAAACGTTTTCCAACCGCTTACGATATGAAATTACatgtcaattcaattcatactGGAGCCAAACCGTTTGCATGCGATTTTTGTGATAGTAAATTCTCCCAACCCAGTACACTGCGAGTGCATAAACTTAAAGTACATCGATAA
Protein Sequence
MLVDKFFSGLNNEDFEQFSQRTTWSEEQLLEFVKEKKWFSHMSNEDNDIDTANNSIPLQVERIVTKDEISSEYSDNNPVNSNDDQVLCHSGSEFDTKIHADRDVNDANYQEIVEDTFRDTRIGIVKSENVPVDNTPLPQGAVPSNHNVKNFVIRVKPVLKSNRTKQDKQQRLEVHMRKHEHMNKTFECHLCRMQHHRMLGLKVHFSRMHVGIKKERLPCPECEKTFLEQAALDRHIRIHKGLAEVYKCPDCNKEFELRCRMMAHLARHSNTKEEHICEICGQIYGSQCYQIPSESVLEHRKTFYLSQKENTESNLEWFGRAQQLIDGCDFIDLAEFLLIDKFICTLQKESVEKLRALQISSSNCLYDSLANDSINTETNNENEGDYKPDIIVDEESKVETALLIDNNTKDENAERPVNLLELKSEPNPEPEIVEPFENDLDDDVPFFNTNVESINSEDDQKLSDLKCQIKKKENKNEDILLNTPSMEKKSEKLKSIKSGQKIKGFTIDAEDRYHCLDCGKSFKQKASYTQHQRLHSGKNLLYCTICNKVFIKPSKLKLHFRKHEREQSVAGKSFECHLCKFQFLRLQGLRIHINLKHVSNIKNSFQCRYCDEVFTQQTTLDDHLRSEHQLNIGHKCPHCNKLFDQDQLLDLKEHLTTHSEIKPFMCEVCGNAFKTRKQLHMHMTRHTNERRFKCGECGQMLKSRSNYKNHLRQHTGERPFKCDHDHCGKTFVQRANYLKHLRWHTGIKPHGCNYCNKRFPTAYDMKLHVNSIHTGAKPFACDFCDSKFSQPSTLRVHKLKVHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-