Aaph000920.2
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:11366376-11376609[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 2.3 1.3e+02 3.5 0.4 1 23 8 30 8 30 0.84 2 24 4.6e-05 0.0026 18.3 0.2 2 23 202 224 201 224 0.94 3 24 2.3e-05 0.0013 19.2 3.8 1 23 231 254 231 254 0.98 4 24 4.7 2.6e+02 2.5 0.2 1 21 258 278 258 280 0.77 5 24 0.093 5.2 7.9 0.1 2 23 413 435 413 435 0.91 6 24 0.00016 0.0087 16.6 2.9 1 23 442 465 442 465 0.91 7 24 0.2 11 6.8 2.7 2 21 473 492 472 493 0.90 8 24 0.0044 0.24 12.0 1.2 2 23 500 522 499 522 0.95 9 24 0.3 16 6.3 0.1 3 23 530 551 528 551 0.88 10 24 0.0096 0.53 11.0 0.8 2 23 742 764 741 764 0.94 11 24 9.2 5.1e+02 1.6 2.3 1 14 771 784 771 785 0.89 12 24 4.8 2.7e+02 2.5 0.2 1 21 785 805 785 807 0.77 13 24 1.8e-06 0.0001 22.7 2.2 1 23 955 978 955 978 0.98 14 24 0.9 50 4.8 1.2 1 10 985 994 985 1005 0.88 15 24 4e-05 0.0022 18.5 0.3 2 23 1011 1033 1010 1033 0.94 16 24 6.4e-05 0.0035 17.8 2.2 1 23 1040 1063 1040 1063 0.97 17 24 1 57 4.6 0.8 2 21 1071 1090 1070 1091 0.90 18 24 1.6e-05 0.00088 19.7 0.4 2 23 1098 1120 1097 1120 0.95 19 24 0.26 14 6.5 0.0 3 20 1128 1145 1126 1147 0.93 20 24 0.014 0.76 10.5 1.0 3 23 1156 1176 1155 1176 0.91 21 24 0.00015 0.0083 16.7 1.1 1 21 1215 1235 1215 1236 0.97 22 24 0.025 1.4 9.7 0.4 2 23 1253 1275 1253 1275 0.92 23 24 0.00074 0.041 14.5 2.7 1 23 1282 1305 1282 1305 0.95 24 24 0.028 1.5 9.5 1.8 1 20 1323 1342 1323 1344 0.93
Sequence Information
- Coding Sequence
- ATGGCCAGTTCTAAGCCAGTTCACGAGTGTTTGTTTTGCCCGCAAACATTCGATAGCGCGACGGCCAAAGATGATCATGTTCTGGAGCATTTCGCGCAAGAAACTTGTACAGAATgcaatcaacatttgattcgaATCGGCAGCACTTTGTACAGTCAACACAATGCAACAGCTTGCATCCGGATGGCAGTGAAATCGGAAATACTCGACAAATCGAGTTCCGACACTCCGGCTGCACCGCAAAATGTTATTCAGCATCATTTGGAGGAATCTACGCATAACAAAAACTACCTTCAGGCAGATGTTACGATGCTAACATCCATTAAAATGGAGGAAATCCATATAAAAGAGGAACCAAACGTTGGCGAGGAACAACAAGACATATTCGAAATCTTAAATGCTGTGGAAACGCAATCGAACGATTCAGGTATaccgaaaattgaatggaCAAATTCTCAACCTGAGGACAATACAGTTGCTTGGACTACTCTTCAATTTGACGAAAATTTAGTCAATTGTGATAGAAGTGCTTTTGAAgaagacaaacaacaaacaattatatCAATGGAGACAAGTCCAGCGTCATTGGAAAAAGGGAAAATATCATGTGACATTTGTGGGAAAGTTCTTAGCTCCAAATCTGCACTTCGAACACATACAAATCTGTTGCATAGTCAGCAGTGTGAGGAATTCGAATGCAATGtatgtaaaatcaaatgtaaatcaaaaGACAATCTTCGCAGGCATATGATTACAAAGCACGATCCAGTTCACGAGTGTTTGTTTTGCCCGCAAACATTCGATAGCGCGATAGCAAAAGATGATCATGTTCTGGAGCATTTCGCCCAAGAAACTTGTACAGAATGTaatcaacatttgattcgGATCGGGAGCACTTTGTACAGTCAACACAATGCTACAGCTTGCATCAGGATGGCAGTGAAATTAGAAATAGTCGACAAATCGAGTTCTGACATTCCATCTGCTTCGGAAAATGTCAATCAGTATGAGGGTCCAGAATATGACGAAAACTCCCCTGAGGCTGATGTTCCTATGTTAACAACCATTAAAATGGATGAAATCTACATAAAAGATGAACCAAACGACGGCAAAGAACAACAAGACACATTTGAAAGCTTGAATGACTTGGAAACACAATTGAACtattcaaatacacaaaaaattgaacgaatgaCTGTGCAATCTATGGAAAGTACATGCGAAAACATTTTAGCATCATGTGACATTTGTGAAGAAATCCTTAGCTCCGAATCCGCactacaaacacacaaaactctGCTGCATAGTCAACAAAGCAATGACTTCGAGTGTCAagtatgcaaaatgaaatttaaaacaaaaggTAATCTTTGCAAGCATATAGTTGGAAAGCATGATCCGGATAAGGACAAACTCAGATGCCAAATATGTCATCAAGTGTTTATGAATGAATCATCGCTTCAATTTCACCAATGTAAACGCAAAGAGGGATCAATTTCATGCAATGATTGCGGAAAAAAACTCAGCACCGGTCGCAAACTTCGCGAACATCAAACTAGATTTCATAGTCCAGCGGGAACGTTATTTTGTAATGCTTGTACTAAAATATTCGACAGCGTTGAGGATTTAAATGTACACAAGGCTGCctTTCACGAGTGTTTGTTTTGCCCGCAAATATTCGATAGCGCGATAGCAAAAGATGATCATGTTCTGGAGCATTTCGCCCAAGAAACTTGTACAGAATgcaatcaacatttgattcgGATCGGCAGCACTTTGTACAGTCAACACAATGCTACAGCTTGCATCAGAATGGCGGTGAAATCAGAAGTGATCGACAAATCGAGTTTCAACACTGCGTTTGATTCAGAAAATATCAATAAGCATCATTCGAAAGGATCTATGGATGACGAAAATTACTTTGATGCTGATTTTACGGTGCCAacatccattgaaatggaGGAAATCCACATAAAAGCTGAACTAGATGAAGCTGAAGAACAACAAGACATATTCGAAAGCTTGAATGCTCTGGGAACGCAATCGAACCATTCAAGTTCaccgaaaattgaatggaCTGATTTTCAACCTGTGGACAATACAGTTACTCTTCAATTTGAGGGAAATGAAGGGAACTGCGATGGAAACGACCTCGAACAAGACAAGCAACAAACAATcatatcaatgaaaaacagTCCAGCGTCAATGGAAAAAGGGAAAATATCATGTGACATTTGTGGGAAAGTTCTTAGCTGCAAATCCGCACTTCGAACACATACAAATCTGTTGCATAGTCAACAGTGTGAGGAATTCGAATGCAATGtatgtaaaatcaaatgtaaaacgAAAGTTCACGAGTGTTTGTTTTGCCCGCAAACATTCGATAGCGCGATAGCAAAAGATGATCATGTTCTGGAGCATTTCGCTCAAGAAACGTGTACAGAATgcaatcaacatttgattcgGATCGGGAGCACGTTGTACAGCCAACACAATGCTACAACTTGCATCAGAATGGCAGTGAAATCAGAAGTGATCGACAAATCGTGTTCCGATAATCCGTCTGCACCGGAAAATGTTATTCAGCATGATTCTGATGTTAATATGGATGATGAAAAGTACACTGAAGATGATGTTTCGACAACAACagccattgaaatgaatgaccccgaaataaaaaatgaaccaaatgagAAAGATGAACGGAGAGATACGTTCGAAAGATTATATGACTTTGAAATGCAAGTGGTTTATTCAAGTACATCACAAATTCAAGGAAATATTTCCAATTCTGAGAGAAATACACACGAAAGTCgtgaatttgaatatgatCTTAACGAATGCAAAAACtcacaaaatcaattcgaatgtAACATTtgtaatatgaaatttaaattgaaaaataaccTGAACAGACATATGCGAAGAGATCATGATCCGTGTGCAGACaaatataaatgtaaaatatgtCATCAAGTGTTTTTAATGGAATCATCACTTCCATCTCACAAGTGTAGGGGAGGACCAGTGTCATGTGACATTTGTGGAAAAACCCTCTCCTCCAAATCCGCACTACGAACGCACACAAATCTACTGCATACTGAACAATGTATTGAATTCGAGTGTcatatttgcaaaatgaaattcaaattaaaaggTGCTCTTCGCAAGCATATGATTATAAAGCATGATCCGGATAAAGACAAACTAGAATGCAAAATATGTGGTCAAGTACTTCTAAAAGAGTCGTCCCTACAAACTCATAAATGTAAGAACAAAGAGGAACCAGTGTCATGCGATGTTTGCGTAAAAGTCTTTAGCTCCAGAAATAATCTTCGACggcatcaaattaaaattcacaGTCCAGATGGGACAATATTTTGTGATGGATGTGCCAGAATATTCGATAGCGTTGAGGATCTTAATAAACACACGTTTGTCTGTAAGCGTCACACACAAGAGCCATGCGATATTTgtggaaaattgttcaaaagaGATTCTCTAAAGAGACATAAAGTTCGGTTTCACAGTCCTCCAGGAACGATTTTCTGTAACCGATGTTTTAAACTATTTTCAACAATCGAGGAAAGAGATAATCATAAACCAGTATGTTTTCCTGGAGAAGTTGATATCAATGGTCGATTTAAGTGCCAagtatgcaaaatgaaattcaaaacgaaagcTCTTCTAAGTCAGCATATGAAAGAAACGCCCGATCCGTGTGCAGAAAAACTCGGATGCGAAAGCAGTGCAGCTCAATGTGACATTTGTGAACAAGTCCTTAGTTCCAAAAGGTCACTACAATTACACAAAACATTGGTGCATAGCCAACAAAGAAAAGAATTCGAGTGTCAAGTATgcaaaatgacatttaaattGGAAAGAAACCTGTGTCGACATATGGAAGAAACGCACGATCCcCTAAAGAGACATGTGCGAAGAGAGCACGATCCATTTTCAGACAaatataaatgtaaacaatgtaaACGCGTTTTTATGAAGGAATCGTCAATTCAAGCGCACGAGTGTAGTGGAGGATCAGTGCCATGTGATGATTGCGGGAAAATTATTTTCGACTATCGAGGAACGGGAAACTCATAG
- Protein Sequence
- MASSKPVHECLFCPQTFDSATAKDDHVLEHFAQETCTECNQHLIRIGSTLYSQHNATACIRMAVKSEILDKSSSDTPAAPQNVIQHHLEESTHNKNYLQADVTMLTSIKMEEIHIKEEPNVGEEQQDIFEILNAVETQSNDSGIPKIEWTNSQPEDNTVAWTTLQFDENLVNCDRSAFEEDKQQTIISMETSPASLEKGKISCDICGKVLSSKSALRTHTNLLHSQQCEEFECNVCKIKCKSKDNLRRHMITKHDPVHECLFCPQTFDSAIAKDDHVLEHFAQETCTECNQHLIRIGSTLYSQHNATACIRMAVKLEIVDKSSSDIPSASENVNQYEGPEYDENSPEADVPMLTTIKMDEIYIKDEPNDGKEQQDTFESLNDLETQLNYSNTQKIERMTVQSMESTCENILASCDICEEILSSESALQTHKTLLHSQQSNDFECQVCKMKFKTKGNLCKHIVGKHDPDKDKLRCQICHQVFMNESSLQFHQCKRKEGSISCNDCGKKLSTGRKLREHQTRFHSPAGTLFCNACTKIFDSVEDLNVHKAAFHECLFCPQIFDSAIAKDDHVLEHFAQETCTECNQHLIRIGSTLYSQHNATACIRMAVKSEVIDKSSFNTAFDSENINKHHSKGSMDDENYFDADFTVPTSIEMEEIHIKAELDEAEEQQDIFESLNALGTQSNHSSSPKIEWTDFQPVDNTVTLQFEGNEGNCDGNDLEQDKQQTIISMKNSPASMEKGKISCDICGKVLSCKSALRTHTNLLHSQQCEEFECNVCKIKCKTKVHECLFCPQTFDSAIAKDDHVLEHFAQETCTECNQHLIRIGSTLYSQHNATTCIRMAVKSEVIDKSCSDNPSAPENVIQHDSDVNMDDEKYTEDDVSTTTAIEMNDPEIKNEPNEKDERRDTFERLYDFEMQVVYSSTSQIQGNISNSERNTHESREFEYDLNECKNSQNQFECNICNMKFKLKNNLNRHMRRDHDPCADKYKCKICHQVFLMESSLPSHKCRGGPVSCDICGKTLSSKSALRTHTNLLHTEQCIEFECHICKMKFKLKGALRKHMIIKHDPDKDKLECKICGQVLLKESSLQTHKCKNKEEPVSCDVCVKVFSSRNNLRRHQIKIHSPDGTIFCDGCARIFDSVEDLNKHTFVCKRHTQEPCDICGKLFKRDSLKRHKVRFHSPPGTIFCNRCFKLFSTIEERDNHKPVCFPGEVDINGRFKCQVCKMKFKTKALLSQHMKETPDPCAEKLGCESSAAQCDICEQVLSSKRSLQLHKTLVHSQQRKEFECQVCKMTFKLERNLCRHMEETHDPLKRHVRREHDPFSDKYKCKQCKRVFMKESSIQAHECSGGSVPCDDCGKIIFDYRGTGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -