Aaph007623.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- grau
- Assembly
- GCA_030463065.1
- Location
- CM059997.1:32510142-32517878[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.2 11 6.9 1.9 1 23 270 294 270 294 0.95 2 23 2.9e-06 0.00016 22.1 0.2 1 23 298 320 298 320 0.97 3 23 0.00055 0.03 14.9 3.0 1 23 324 347 324 347 0.94 4 23 0.043 2.4 8.9 0.2 3 23 440 460 438 460 0.92 5 23 4.5e-06 0.00025 21.4 2.6 2 23 470 492 469 492 0.96 6 23 0.85 47 4.8 1.8 2 21 516 535 515 538 0.88 7 23 9.9 5.5e+02 1.5 0.2 6 23 548 565 548 565 0.97 8 23 0.0032 0.18 12.5 1.3 1 23 571 593 571 593 0.95 9 23 1.5e-05 0.00081 19.8 0.6 1 23 601 623 601 623 0.97 10 23 0.45 25 5.7 0.8 2 23 632 654 631 654 0.92 11 23 0.0015 0.084 13.5 0.2 1 19 665 683 665 686 0.90 12 23 0.018 1 10.1 1.6 1 23 895 917 895 917 0.98 13 23 8.1e-05 0.0045 17.5 0.2 1 23 923 945 923 945 0.97 14 23 0.00071 0.039 14.5 2.3 3 23 951 972 950 972 0.96 15 23 1.1 63 4.5 0.7 2 23 1000 1022 999 1022 0.92 16 23 4.5e-05 0.0025 18.3 0.3 1 23 1055 1077 1055 1077 0.98 17 23 0.016 0.9 10.3 1.8 1 23 1085 1107 1085 1107 0.98 18 23 0.0073 0.41 11.3 2.1 1 23 1115 1138 1115 1138 0.94 19 23 0.00034 0.019 15.5 0.6 3 23 1149 1170 1148 1170 0.97 20 23 0.042 2.3 9.0 0.2 2 23 1181 1202 1181 1202 0.97 21 23 0.78 43 5.0 2.1 2 23 1208 1230 1207 1230 0.92 22 23 0.00012 0.0069 16.9 0.1 1 23 1235 1257 1235 1257 0.98 23 23 0.25 14 6.5 1.1 1 23 1263 1286 1263 1286 0.96
Sequence Information
- Coding Sequence
- ATGGACGATATTGATAATCGAATGTGCCGCATGTGTTTCGCAGCACAAGTGCATTTAATCGATATTTACGATGAATTCGAATCGAATATTGCCGAAATAATTAGTACACATATCGGAAAaGTGAGCAAAACCGATGCATTTCCAAAGTACATTTGCTCAGAATGTTGGCAAAAAACCGaagaatttcataaattccaTAATTCGGTGATGAAAGCTCAAGAAAattatttgacaaaaatgGTAAAGTATGAAGAAGTGGAAACTGAAGCACacgatgaaaatgtgatttcatttgaaaatgtcaatacGGAATCGATGGGCCAATCTGCATCCGAATCAGAGGATGGAATAGTGGCAGAACCAGCGCCAGTGATGGTGACAGCAATGGAAGAACAAGTGGTCGGTTCACAGCCAGAAATTGAAGCTGAAATTGATcaagcatttgaaaatgatattgctAATTATGAtgataatattgaaattgatgaggaaattttaacaaacatcaaattgGATCAGCTGGATTGTGATTTCAATAGTGATTCGGATGAGGAGAGTTTGGCATCCAAAAGAGATGCACTAAAAGTGCCTGAAGTATATGTCGATCCGGATAAAAGGCaagaaatattaaataatttcGATACAACGTGCGATATTTGCTCGGTGTATTTGGGATCACTGAAGAAAGCAATCACTCATTACAAGAAACAACATCGAACGGATGGTTACATAAAATGCTGCGgacttaaatttaaaaaagacTGTTTGGTCGATGAccatattaaaatgcatatcAAACCGGATATGTTCAGGTGCCATTATGAAGGTTGTAACAAGATAATGAGAACGCGAATGTCATTGCAGGTGCATACAAGTGATCATCGAtgtaattttgaatgtgaCATTTGCGGTAAAACGTTTATACGATTGCCAAAACTGGCCCGTCACATGACCCttcattcaaatccatttgtgTGCGATATTTGCTCGAGAGTATTCCGTTTCAAGGAAAAACTTGAGCACCATCTTCAATTTAAACACAGAGGAGatattgTTAAAAAGCAGCAAAATCAATTGAGAGAAATCtgcaaaatggaattaaatcCAGCCGATGTTGATCGTATTATTGCCACACATTGTGATATGAGCTGTGATATCTGTTCGGTTGTGTCCAAATCACTACCAGAGGCACAATATCATTATTTGCATGAACATCAAAATACGGATGGCTACATCAAGTGTtgctcattgaaatttaaagaTGTTCAAAAATTGCACGGTCacattttatggcatttgaAGCCAGAAGAATTAATATGTATAATCTGCTCAAAAGAGCTTCGTTCGATTTCGTCACTAAAGGCCCATCTAAGGCAACATGAAACACCTCAAGCAGCCAACAAAAATCAGTGTCAAATTTGCAAAAAACGATTTACTGGAAAAGATCAACTGACCAAACACATGAGGCTGAAGCACGGATATTCATCCTACGCGCACAAAACGAAAGTTGATTACAGCGATCGAATTGAAGAATTCTTTgacatgaaatgtgaacagtGTGATAGTAAATTTACATCTCTACAGCATGCCAAACTCCACTACTTTGACGCGCATAATATTACGAATGGTTACATTAAATGTTGcaacatgaaatttaaaaccatTGGTAAAATCAACGATCACcttcaatatcatttgaatcCAGAACTATACAAGTGCCcaatatgtgaaaaaattcTTCCACGAAGCTGTGATCTTAGtcaGCATTTGTACTTCCATAAAACTCTGACTGATAAGCGATTTGCTTGCGAACTTTGTGGTAAAGCATTCCAATCGAATTTCTTATTAAATAAACATGAACGTACGCACAAACGAGATTCCACCAAAAAAATCTCTTGCAATAAATGTCAACGAAAGTTTTTGAGTGTGCAGTCGTTGGAAAATCATGTCGATAGAACACACAACAAGAGCAATGGTAAGGAGGCGAGAATGTTTTTGTGCCAAATGTGTGGcaaatcatttaaaacattGGCATCGGTCAAAGCGCACAGCCAATTGgtAAATCAATCAGATGCATTGCCGAAATGTGTTTGTGCCGATTGTTGGACAAAAACCGAAGAGTTTCATAAATTCCATCGAATGGTGCACAGCGCACAGGaagaatatttaaaacaaattgttaaatttgaaGCGGAAAATGAGCCAGAAATCAATACGGAGCAACCGAATTTCGTTGAAGTCATCACCAATTGCGATGAATTTAATGAGTTTGCAGATGAATATGCCACAAAGCCAATTAACGAACTTGACGATGTTGAACAACACGAAACTAAACCCGATGAATTTACCGATACGTTTTATAATGATGAACAAATTGATGCTCTTGAtgaacaaatcgaacaaattgaaGGTGCAGAGGAGCATACTGATTCAGAGAGTGAATTTACCAACGATTCAAAATCCATTGATCAAGTAGATCCAATCAAAAGCAAgcaaatttttgaacaatacTTCGATACAACTTGTGATATTTGCTCGGTTAATTTGTGTACACTGAAACGTGCAATTTCACACTATAAACATGTACACTGTGAAGAAGGCTACATCAAATGCTGCGGCctaaaattgaaacaagatAAATACGTCGATGATCATATCAAATGGCATATTAACCCCGAAATATTTAAGTGTAGATACTGTGATCGAATTATGAAAACCAAACTATCACTTTCGACGCATATAGCTAAACATAGACATGCCAAACAATACATTTGTGATATATGCGGCAAAGTATATTcgcaaattgataaaattagAAATCACATGCTTAACCATTCGCGGTCAGCGATTTGCAACATTTGCAACAAATCTTGTTCCACCAAAGAAAAACTCGATGCTCACCTAAAATACTATCATAAACCAGATATACCAGAGCgaccaaaacgaaaattgaatgccattCATCCGGATTTCAATatacaacaattttttgaCATGCAATGTGAAATTTGTAAAACCGAACTATCGACATTGCAACACGCCAAACTACACTACCTCGAAGAGCACGATATACCCGATGGTTATATTAAAtgttgtgaaatgaaatttagaGAGGttaaaaatatcaacgatCATCTACAATATCATATGAATCCGAATATTTTCAAatgtgaaacATGTGTTAAGATATTCCCTCGCAAGGCTGATTTAAGCGCTCATATGTCACAGCACAAAGCGgtcgaaacgaaaaaattcaCCTGTAATAAATGTGGCAAAATATGGAAATCGAAGTATCGCCTGGACATACATAAACGGTCTCATGAGGAAAAAACAGCCAAAACATTTCCATGTGATTACTGTAACAGAAaGTTTTCAACGGAGAAACTACAACAATCGCACACCTTTCGAATTCATGAGGCAGACAAAGAAGCCAAATCGGAAATTTGTGAATATTGTGCAAAAACATTTACAACGCGAAAAGAAGTGTTGTCACATATTCGTAGCATGCATACGGAAAATTCGGTTCGACGTGAAAAAGCCCAATGTCAAGTGTGTGGTGCTTGGCTTAGCAATCGTTATACGTTAAAAGAGCACATGATTCGACACAATGCCGaaccacaaaaatgttcacaatgtGATAAAATCTCACCAAATCAACATGCTCTATTGTGCCATGTTCGAGAAGTTCATTgtgatcgaatttttcgatgcaATTTATGTCCAAAAACCTTCAAAGCAGCTGTTGCTCTAAAGgatCATGTCGCAACGCATACCGGtgaaaaaatgcacaaatgttcattttgtccTGAAGCATTTATTTGGAGACCGAACATGTATAGCCATCAGAAGAAGGCACATCCAGaagaatggaaaaagaaaaaaagtgaaattcgACGAAGATTAAAATGA
- Protein Sequence
- MDDIDNRMCRMCFAAQVHLIDIYDEFESNIAEIISTHIGKVSKTDAFPKYICSECWQKTEEFHKFHNSVMKAQENYLTKMVKYEEVETEAHDENVISFENVNTESMGQSASESEDGIVAEPAPVMVTAMEEQVVGSQPEIEAEIDQAFENDIANYDDNIEIDEEILTNIKLDQLDCDFNSDSDEESLASKRDALKVPEVYVDPDKRQEILNNFDTTCDICSVYLGSLKKAITHYKKQHRTDGYIKCCGLKFKKDCLVDDHIKMHIKPDMFRCHYEGCNKIMRTRMSLQVHTSDHRCNFECDICGKTFIRLPKLARHMTLHSNPFVCDICSRVFRFKEKLEHHLQFKHRGDIVKKQQNQLREICKMELNPADVDRIIATHCDMSCDICSVVSKSLPEAQYHYLHEHQNTDGYIKCCSLKFKDVQKLHGHILWHLKPEELICIICSKELRSISSLKAHLRQHETPQAANKNQCQICKKRFTGKDQLTKHMRLKHGYSSYAHKTKVDYSDRIEEFFDMKCEQCDSKFTSLQHAKLHYFDAHNITNGYIKCCNMKFKTIGKINDHLQYHLNPELYKCPICEKILPRSCDLSQHLYFHKTLTDKRFACELCGKAFQSNFLLNKHERTHKRDSTKKISCNKCQRKFLSVQSLENHVDRTHNKSNGKEARMFLCQMCGKSFKTLASVKAHSQLVNQSDALPKCVCADCWTKTEEFHKFHRMVHSAQEEYLKQIVKFEAENEPEINTEQPNFVEVITNCDEFNEFADEYATKPINELDDVEQHETKPDEFTDTFYNDEQIDALDEQIEQIEGAEEHTDSESEFTNDSKSIDQVDPIKSKQIFEQYFDTTCDICSVNLCTLKRAISHYKHVHCEEGYIKCCGLKLKQDKYVDDHIKWHINPEIFKCRYCDRIMKTKLSLSTHIAKHRHAKQYICDICGKVYSQIDKIRNHMLNHSRSAICNICNKSCSTKEKLDAHLKYYHKPDIPERPKRKLNAIHPDFNIQQFFDMQCEICKTELSTLQHAKLHYLEEHDIPDGYIKCCEMKFREVKNINDHLQYHMNPNIFKCETCVKIFPRKADLSAHMSQHKAVETKKFTCNKCGKIWKSKYRLDIHKRSHEEKTAKTFPCDYCNRKFSTEKLQQSHTFRIHEADKEAKSEICEYCAKTFTTRKEVLSHIRSMHTENSVRREKAQCQVCGAWLSNRYTLKEHMIRHNAEPQKCSQCDKISPNQHALLCHVREVHCDRIFRCNLCPKTFKAAVALKDHVATHTGEKMHKCSFCPEAFIWRPNMYSHQKKAHPEEWKKKKSEIRRRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -