Aaph013670.2
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:11720364-11722909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.86 48 4.8 0.9 2 23 42 63 41 63 0.96 2 17 0.1 5.7 7.7 4.7 1 23 182 204 182 204 0.98 3 17 0.31 17 6.2 1.7 3 19 212 228 211 233 0.89 4 17 0.23 13 6.6 2.8 1 23 280 302 280 302 0.98 5 17 0.0036 0.2 12.3 0.2 2 23 309 331 308 331 0.96 6 17 0.005 0.28 11.9 0.8 2 23 387 409 386 409 0.95 7 17 0.014 0.8 10.4 2.3 1 23 460 482 460 482 0.98 8 17 0.00019 0.01 16.4 0.6 1 23 487 510 487 510 0.95 9 17 0.033 1.8 9.3 2.6 1 23 540 562 540 562 0.98 10 17 0.0049 0.27 11.9 0.7 1 23 567 589 567 589 0.94 11 17 0.0013 0.073 13.7 0.4 2 23 598 620 597 620 0.97 12 17 2.6e-06 0.00014 22.2 3.7 1 23 637 659 637 659 0.98 13 17 1.1e-06 5.9e-05 23.4 0.9 2 23 667 688 666 688 0.96 14 17 0.037 2 9.1 1.2 2 23 694 714 693 714 0.97 15 17 4.8e-06 0.00027 21.4 1.2 1 23 720 742 720 742 0.98 16 17 4.7e-06 0.00026 21.4 1.5 1 23 748 770 748 770 0.99 17 17 0.0029 0.16 12.6 3.7 1 23 776 798 776 798 0.97
Sequence Information
- Coding Sequence
- ATGGAaactgtttttgttggtgaAACACCGATTGACCTAGATCAGTGGGCAAACGTTGGTGacgattttcaaaaattgaaaatcggtgaaatatttcaattgaaagacAGCCGATTATCTATGACATGTACAAACTGTTTACAAGAGTTCCAATATTTTACTGAATTTACGCTTCACATCCAGGACCATTATTGGCGCGGAGAAATAACGCAATTGAAAGAAATCAAAGAAGAAGTTCCGGTTGAAATTCATCGTGAAACAGTGGAACCAGTCGAGTCAGAGGAGTCAGAGAACGAACAAGATGGATATGAACACTATGAAGACGATGATGAAATGCCAATGTCACCAATGGTTAAGTGTGAAGTAATCGAAAACGAGACACATGACAATTCTGCACTGGGTTGGTCGGATGACGACTTTGGTGGTGATAAGCATAGTATTTTCGATACCGAACGAAATTTCGATACCGAAATTGCTCATGATTCCAtgcaaaaacaattgcaatttatcGAAGGTACTGACTATGAAAGGGTTGAAGATAAATTCAAGTGTTTGACATGTGAccataaaactgaaaaattgaaacatttaagaGAGCACTTGCTAATTCATTCAAGTCCAAAAGATGTTTTATGTCCGATTTGTTCGAAATTATTCGCAACAGTGTCATACGTGCGAAAGCATTGCAGCCGAACACACAATGTGAGAATAAGCGCgagtaaaataaaagaatctCAACCAACAAATAAGCCCGTAGCTGTTGCTACCCCGACGATGACAAAAGAAGTTAAAAAGGTGTATGATGAGGATATTGATTATAAACGGGTCgatgataaatttcaatgtttaacTTGTGATCGAAAAATGGCCAAGTTTGATCACATGAAAGAACACCTGCTTACGCACAGCACTACCAAAAATGTGTACTGTCCGTTCTGCGCTAGAGCATTTATAACTGAATCATACGTTCGCAAGCACGTTAATCGTacgcataaaatgaaaattactgctgatgaaataaaattcgcaCAAGCATCGATTGATATATTGCAAGTGAAAACGAAATGGGCAATTGAAAAGGATAAGATTGCAGCCAAATCCAATAAGGGAccgaaatcaaaatcaaattcaacagATTCAGCGGAATATGGAACGATCAGCTGTTTATTTTGTGCGAAAAGATTCACAAAACCCCGATACGCCCAGAAACACATGCGCCTAATTCACGCCAAACCAATACCAATTAGTGAAGTTGTGAATTGTCAACTGCAGCGTGGCGGTGAAAAGTTAGAAACTCAGAACGTGGACGCGGATTACAAGAGTGAGCAACACATAGATGTTGCTGGCGAAGAGAATGAAACGCAGCCAGAAAagaaattcgaatgttttgaatgtcACAAGCAATTTGTTGGTTTGAATTCGACGCGAATTCACATGAAACTTCATAGtggaataaaatatcaatgtcCACATTGCGATAAATTGTTTGCCATGAAAAGCTATGTTCGCGATCACATTGTGATTATGCATGGTATTAAACGGGACGATATACCAAAAGAAAGCATCCGGCAGGCGACGGGAGATTTTCCACAAACATATCGACCTGTTATTGGTTCATACGAATGctatttgtgtaaaaatgaatataagaAGAGAAATCGGCTACGCGAACACATGAATTCACATATATCGGGTCCATACCTGTGTGTTATTTGCGGAGCTGTGTATAAATCAACGGACACACTCAGACATCACAACGAACGACACAAAGCCAATCCAGATGAACGGATCCAATGCCCCGAATGCATTAAAACTTTCCCGACCAGACGCTACATGCTCAGCCATTATCGAACTATTCATCTGAACAAACGGAGAAAGAAGTTGAGGCCGCTTgagaagaaaattgaattcgaatgcAGAGTTTGTGATAAGAAATTCTTCAATCAACATAATCTCAGACAACACATGATGGTTCATAATCGTGATCCGAATGAGCTCATTTGCCATATTTGTGGGTGGGAATTCAAAGAGCGAAGCAACTTGAAACAGCACATGGAATCACATGGAAATAATAAGACGACATGCGAAGTTTGCCACAAAGTGCTTTCGATTCGTTACCTTCAAGAGCATATGAAAATCCATAACGGAAACAAAGAGTTTCAATGTGCAACTTGTGGTAAGCAATTTGTTAGCAGGGAGCGCCTTAAGAGGCATATGATTCGACATAACGGGGAGCCCAAGTATAAGTGTGATTTGTGTCCGAAAGCATACACAAGATCTGATAAGCTATTGTATCATCGACGAACTCATGACCAGCAAATGACGCACACATGCCAGAGCTGTGGGAAAGGTTTTTTCTCAATCAAATCGTTGcgaaaacatgaaaacaaacattatTTAGAAGAAAACGGAATTTTGAAGCCAAACTCATCCGATCAacccattgaaatgaaaatagaatag
- Protein Sequence
- METVFVGETPIDLDQWANVGDDFQKLKIGEIFQLKDSRLSMTCTNCLQEFQYFTEFTLHIQDHYWRGEITQLKEIKEEVPVEIHRETVEPVESEESENEQDGYEHYEDDDEMPMSPMVKCEVIENETHDNSALGWSDDDFGGDKHSIFDTERNFDTEIAHDSMQKQLQFIEGTDYERVEDKFKCLTCDHKTEKLKHLREHLLIHSSPKDVLCPICSKLFATVSYVRKHCSRTHNVRISASKIKESQPTNKPVAVATPTMTKEVKKVYDEDIDYKRVDDKFQCLTCDRKMAKFDHMKEHLLTHSTTKNVYCPFCARAFITESYVRKHVNRTHKMKITADEIKFAQASIDILQVKTKWAIEKDKIAAKSNKGPKSKSNSTDSAEYGTISCLFCAKRFTKPRYAQKHMRLIHAKPIPISEVVNCQLQRGGEKLETQNVDADYKSEQHIDVAGEENETQPEKKFECFECHKQFVGLNSTRIHMKLHSGIKYQCPHCDKLFAMKSYVRDHIVIMHGIKRDDIPKESIRQATGDFPQTYRPVIGSYECYLCKNEYKKRNRLREHMNSHISGPYLCVICGAVYKSTDTLRHHNERHKANPDERIQCPECIKTFPTRRYMLSHYRTIHLNKRRKKLRPLEKKIEFECRVCDKKFFNQHNLRQHMMVHNRDPNELICHICGWEFKERSNLKQHMESHGNNKTTCEVCHKVLSIRYLQEHMKIHNGNKEFQCATCGKQFVSRERLKRHMIRHNGEPKYKCDLCPKAYTRSDKLLYHRRTHDQQMTHTCQSCGKGFFSIKSLRKHENKHYLEENGILKPNSSDQPIEMKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -