Aaph004873.2
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- br
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:51204294-51222429[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.0061 0.34 11.6 3.2 1 23 131 154 131 154 0.98 2 35 0.00021 0.012 16.2 0.7 2 23 174 195 173 196 0.94 3 35 1.3 71 4.3 1.0 3 21 204 222 202 223 0.87 4 35 0.0023 0.13 12.9 3.1 3 23 241 262 240 262 0.96 5 35 0.73 41 5.1 0.2 1 23 275 297 275 297 0.94 6 35 1.3 72 4.3 0.2 1 23 467 489 467 489 0.92 7 35 0.00078 0.043 14.4 2.0 1 23 710 733 710 733 0.98 8 35 0.026 1.5 9.6 0.3 2 23 774 796 773 796 0.91 9 35 9.5 5.3e+02 1.5 0.1 2 11 803 812 802 822 0.80 10 35 8e-05 0.0044 17.5 2.1 2 23 843 865 842 865 0.96 11 35 1.3 72 4.3 0.2 1 23 912 934 912 934 0.92 12 35 7.5 4.2e+02 1.9 0.2 3 23 1121 1141 1120 1141 0.88 13 35 4.9e-05 0.0027 18.2 2.9 1 23 1147 1170 1147 1170 0.97 14 35 0.0027 0.15 12.7 0.3 2 23 1211 1233 1210 1233 0.91 15 35 9.6 5.3e+02 1.5 0.1 3 11 1241 1249 1239 1259 0.84 16 35 8.4e-07 4.7e-05 23.7 1.4 2 23 1280 1302 1279 1302 0.97 17 35 1.3 72 4.3 0.2 1 23 1312 1334 1312 1334 0.92 18 35 7.5 4.2e+02 1.9 0.2 3 23 1521 1541 1520 1541 0.88 19 35 0.0037 0.21 12.3 1.9 1 23 1547 1570 1547 1570 0.97 20 35 9.2 5.1e+02 1.6 3.4 1 21 1577 1597 1577 1598 0.95 21 35 0.022 1.2 9.8 0.2 2 23 1611 1633 1610 1633 0.91 22 35 1.1 63 4.5 0.7 2 23 1726 1747 1725 1747 0.93 23 35 8.4e-07 4.7e-05 23.7 1.4 2 23 1758 1780 1757 1780 0.97 24 35 2 1.1e+02 3.7 5.1 1 19 1787 1805 1787 1808 0.94 25 35 0.00047 0.026 15.1 0.0 2 23 1823 1845 1822 1845 0.91 26 35 0.24 13 6.6 0.2 3 19 1853 1869 1851 1871 0.83 27 35 0.011 0.63 10.7 2.1 3 23 1890 1911 1890 1911 0.97 28 35 0.026 1.5 9.6 2.0 3 20 2017 2034 2015 2036 0.94 29 35 1.3e-05 0.00071 20.0 1.7 1 23 2044 2067 2044 2067 0.96 30 35 0.13 7.2 7.4 2.2 2 20 2075 2093 2074 2095 0.92 31 35 0.0012 0.066 13.8 0.0 2 21 2100 2119 2099 2120 0.93 32 35 3.7 2.1e+02 2.8 0.4 1 23 2136 2158 2136 2158 0.85 33 35 0.28 15 6.4 1.2 3 23 2313 2334 2311 2334 0.92 34 35 3.6 2e+02 2.9 0.1 2 13 2341 2352 2340 2358 0.87 35 35 0.00099 0.055 14.1 0.6 2 23 2369 2391 2368 2391 0.95
Sequence Information
- Coding Sequence
- ATGGAGCATCAAACAGAACATGTCGCAGAGGTCGAATATAAAACCAATAAAGCGGTTCCAATGgatgacatttcaaatcaaaatcgctTTGAAGACGAGACTGTAactgttttttcaattttggcaACAAACGAACTCGATAACATACAAACGATGGCAAATCCAATAGTTCGATTGCACATGCCAAAGATTGAGATGGATTTAAAAGAGTCCGATTGCTTTCCTTGTGACCAGTTTCAAAACGAATCTGATCCGGATGAAGATACCGCAAATATCGATACgctgaaaatgaataatgttCGAAAAAGTGATCAAAACCAACTAAACATGAacgatattttcaataaagagAAGAAGATACAAATGGAAACAAGACTACACTTTGACCATTTCAAGTGTGATATATGTAAATCAATGTTGaaaaactttgaaacactgcGCAAgcatatgaaaagaaaacaccagCCAAAATCGTCTGCACAAAATCATCTTCATAAAACTAAGCAACCAGATCCAATCCCATGTGAGTACTGTGGTATGATGTTAGCGAACAAAAGTTCACTTCGAAAGCATCAAGTCAGGCATCACAGTGCACCAGGAACGCTATTTTGTAAAACATGCGGTAAATTATTCACCGATACGAAAGAGCATGAAATGCATATGCTAAAATGTATAATGAAAGAACGAATTCGacaatcgaaaaattccaCCGAATTACTGTGTGAAACGTGCCAAAAAcagtttaaaacaaaacgtacattgcgcaaacataaaattatgCAGCACAGTGCACCAGGAACACTGTTTTGTAAAGTTTGTGttcaTCAATGTTTGTTCTGTCCGCAAGTGTTTGATAGTGCCGCTTCAAAAGATGACCATATTCTGGAGCATTTTGCCCAAGAGGTGTGTACCGattgcaatcaaaatttaattcgaatCGGTAGCAATTTGTACACACTTCACAATGCTGTGACTTGCATTAAAGACGTCGACAAGTCTGAAGATGCGATTAAACCATGCACTTCAAACTATACGATATTGCCaagtaaaaatcgatatgaGCCAAAATATGAAGTAAATGGAGAAGTAGACAGTAAAACCAACGACGATACCAATATATTTGAAGAAATACTCATCAAAGTGGAATCAGACGAAGAGAATGATGAACAACGTTCGGAGTACATAGTCATGGATATGAATCAATTGCCAGATACAAAAAGTCTAAAAATCGATTCCGACCtagaaaatgaatgtcaaCCAAAATCCACAGCTATGGACATAAATCATGCACCAGATCACAAAGAAATTAAATCCGATCTCGAGCCATCCAATGAAGCTCAATCAAATGTATCCCAAGATAAAAATCGTTTAGAAACTCcatttgaacaaatccaaaTCCATGAGTGTTTATTTTGTCCGCAAACATTTGATAGTGCGGCAGCAAAAGATGATCACATATTACAACACTTTCCACAAGAGATGTGCATGGATTGCAATCAAAACTTGATTCGCATTGGGAGTAATTTGTATACACTGCACGATACAATAACATGTATCAAGAGAGATTTGAAAACGGAATCTAACGAAGAAACACATTTGGCCAACAAACCGTTGTTATCGCACTCGACCCAATATGGGCCACCCGATACAATTTGCAGAGAGCCTATTTACCCGATGCCAACTATTTGTACAGAGGCAGAAATAAAACCAGAGCCACCTGAACATGTTGAGCACAGTGATACACTTGAAGAGACAAATTATTTGCATCAAAGCAGCGATTTTCCTACAGAATCGCATAATGACAATTTAATAGTGGAACCCATCATGGTCTCAGTTGAGTTGCCAGTAAAATCAGAGTTCTTCGATGAACATGAAGAATATAACCAAATAACTGACGacaatgacgacgacgacgacgacaacgacgacgattACGACAATCAATCAGCAataatacattcaaatttgaatgataCACAGCAGCACTCGAAAGATGCAACTGAGCTAGTGattcaaaagaagaaaattgttGGCAAACACGCTGCATGTGATGTTTGTGGGAAAGTTATGCTCGCAACCTCACTTTACAATCATGTTAGATACGctcatcaaacaacaacaaatgaatacaaatgtgAACCATGCAAAAAACGATTTAAGACAGCTGATATTCTTCGCAAACACATGCGAATGAAACATGATCCTACGGTTGAAAAgttcaaatgtaaattatgCTGTTTGGTGTTTCTGAAGGAAGCTACGCTGCGTGCTCATCCATGCAAACGTAAAATGGGACAAACTCCAAAAAGCGATCCAATGCCGTGCGACATTTGTGGTAAAATGCTTGGCAGTAAATTATCActgaaaaaacacaaaacattaatGCATAGTCCGCCCGGAACGATTTATTGTAATGTTTGCGGTCGATTATTTTCGGTGATCGAAGACCGAGATGAACATCAGACAGAATGTgctgaaaaaagaaagaatcgTAGTAGTGCAGCCGGATTTAACTCAAAGCCACTCAGATGTGATGATTGTCGAAAGGAATTTAAAACGCTGGGAACATTTCGCAGTCATATGCGAATGAAACATGATCCTACTGTTAAAAagttcaaatgcaaattatgCTGTTTGGTGTTTCTAAGGGAAGCTTCGCTGCGCGCACATCGATGCAAACGAGAAATGGGTGAAACTCCAAAAAGCGATCCAGTGCCCTGCGACATTTGTGTCCATGAGTGTTTATTTTGTCCGCAAACTTTCGATAGTGCGGCAGCAAAAGATGATCATATATTACAACACTTTCCACAAGAGATTTGCATGGATTGCAATCAAAACTTGATTCGTATTGGGAGTAAATTGTACACATCACACAATGTAACAACTTGCATCAAAAGAGATTTGAAAACGGAATCTAACGAAGAGACTCATTTGACCAACCAACCATTGTTATCCCACTCAAACCAATATGGGCCACCCGATACGATTTGCAGAGAGCCTATTTACCCGATACCAACTATTTGTACAGAGGCAGAAATAAAACCAGAGCCACCTGAACATGTTGAGCACAGTGATACACTTGAAGAGACAAATTATTTGCATCAAAGCAGCGATTTTCCTACAGAATCGCATAATGACAATATAATTGTGGAGCCGGTTATGGTTTCAGTTGAATTGCCAGTAAAATCAGAGTTCTTCGATGAACGTGAAGAATATAACCAAATAActgacgacgacgatgacgattGCGACAATCGATCGGGATTAAAACATTCTCATTTACATGAAATACGAAAGCAGTCGAGAGATAAAACTGGTGAAGTCAATCGAAAGGAGAAAATTGTTGGCGAACATGCTGCATGTGATGTTTGTGGGAAAGTTATGCTCGCACATTCACTTTACTATCATATTAGAAACGTCCATCGAACGACAAAAGAATTCAAATGTGAACCATGCAGAAAACGATTTAAGACAGCTGATTATCTTCGGAAGCACATGAGAATGAAACATGATCCTAGTGTTAAAAAgttcaaatgtaaattatgTTGTTTGGTGTTTCTGAAGGAAACTTCGCTGCGTGCTCATCAATGCAGACGTGAAATGggcgaaaaaccaaaatccgATCCAATGCCATGCGATATTTGTGGTAAAATGCTTGGCAGTAAATCATCACTCAAAACTCACAAAACACTACTGCATAGTCCGCCCGGAACgattttttgtaatatttgcGGTCGATTATTCTCTGAGATCGAAGACCGAGACGAACACAGGTCAAAATGTGCTGACAAAAGAAAGAATCGTAGTAGTGCAGCTGGATTTAACTCAAAGCCAATCAGATGTGATGACTGTcgaaaagaatttaaaaatgcgGAAAATCTACGAAAACACATGCGAATGAAGCATGATCCTAGTGTTAAAAAgttcaaatTCCATGAGTGTTTATTTTGTCCGCAAACATTTGATAGTGCGGCAGCAAAAGATGATCACATATTACAACACTTTCCACAAGAGATGTGCATGGATTGCAATAAAAACTTGATTCGCATTGGGAGTAATTTGTATACACTGCACGATACAATAACATGTATCAAGAGAGATTTGAAAACGGAATCTAACGAAGAAACACATTTGGCCAACAAACCGTTGTTATCGCACTCGACCCAATATGGGCCACCCGATACAATTTGCAGAGAGCCTATTTACCCGATGCCAACTATTTGTACAGAGGCAGAAATAAAACCAGAGCCACCTGAACATGTTGAGCACAGTGATACACTTGAAGAGACAAATTATTTGCATCAAAGCAGCGATTTTCCTACAGAATCGCATAATGACAATATAGTTGTGGAGCCGGTTATGGTCTCAGTTGAGTTGCCAGTAAAATCAGAGTTCTTCGATGAACGTGAAGAATATAACCAAATAActgacgacgacgatgacgattGCGACAATCGATCGGGATTAAAACATTCCCATTTACATGAAATACGAAAGCAGTCGAGAGATAAAACTGGTGAAGTCAATCGAAAGGAGAAAATTGTTGGCGAACACGCTGCATGTGATGTTTGTGGGAAAGTTATGCTCGCACATTCACTTTACTATCATATTAGAAATGTCCATCGAACGACAAAAGAATTCAAATGTGAACCATGCAGAAAACGATTCAAGACAGCTGAAATTCTTCGCAAGCATATGCGAATGAAACATGATCCAAGTGTTAAAAAgttcaaatgtaaattatgttgtttagtttttatGAAGGAAGCCACGCTGCGTGCTCATCTATGCAAACGTGAAATGGGTGAACCACCGAAAACCGATCCAATGCCATGTGACATTTGTGGTAAAATGCTTGGCAGTAAATTATCACTCAGAAAGCACAAAATATTACTGCATAGTCCACCCGGAACGATTTTTTGTAATGTTTGCGGTCGATTATTTTGTGAAATCGAAGATCGAGACGGACATCGGATAGAATGTGctcgaaaacaaaagaatcggagtttaaaatttttcaaaactcGAAGTAATAACAAAGAAATGACATGTGACGAACCAAGCAGTTTAGTCGATGATTCTCACACAATTTCACAAACATCAGATCAATCAAATTCGATTGAACAGCAtgaggataaaaaaaatcgcaaacgaaAATTCACCGAAGATCATTCAGAGTGTAAAATTTGTGGAAAACTTTTACATGCATCATCAATTTATAGtcatatgaaaaatgtacaTAGTGCAACCGGATTGAATTCAAAACCAATCAGATGTGATGACTGTcgaaaagaatttaaaaatgcaGAAAATCTACGAAAGCACATGCGAATGAAACATGATCCAACagtaaaaaaattcaaatgcgaACATTGCTGCAGAGTATTTGTGCAAGAAAATTCACTGGAGAATCACAATTGTAGCCGAAAGATGGGCAAAACCGTTGAGAAAACTAATGCCACAATTCCATGTGAAATTTGTGGAAAGATATTGAGCAGTAAAGGTGCGCTTCAGAGGCATCAAGTTCTTTTACACACCTCACCAGAGACCATTTTTTGTAATGTTTGCGGTAGAAAATTTAGTAATACAGAGGACCGTGATGTTCATAGAGAAGACTGTGCTCTTAAATCACACAATCGAAAATCCAAAGCATTTAGCGAACTTGGATGCTTTATTTGCAATACAAAATTTATGTCAAACGATGCACTTCGCCATcatatcgaaatgaaacatgaaaattgtgagaaatttgaatATATTAACCAATATGATTCGTGTAATGTAACTAGCGAAGAACACCAGACTACGGAGGGAACCCCAAGTATAACAGCAATTCATTTggatgaaattcaaataaaggATGAAATCGATCTGGAATATGAATCATCAAACACACTCGAAAGCTGTAATGACTTCGACGAACAAGCGAGTTGTTCAAATGAACGAGATGCGAGTGAGATTCCATCAAGCAAATTACAAAATCCCCAGGTTGATGGGACAGATCAAATCAATAATTGCAAACCGCAACGTAAAGGAGATCCAGTAATATGTGATATTTGCAAAAAGGTTCTTTGCTCTAAATCTGCACTTCAATGGCATCATATTTGTATGCACGGTCCACCAAAAGAATTCAATTGTCACATTTGTGACAGGACATTCCGATTGAAAGCTAATCTCGGCAAGCATATGCGCGCTCTGCATGATCCTTCTGCAAATAAACTCAAGTGCAAAAAATGCAGTCGTATATACGCCACAGAATATACGCTTCAAACGCACAGCTGCAGAAAACCACCGATGCCATGTAACGTTTGTGGAAAGGTGCTCAGCAGCCCAACAACATTACGTACACATATCATACGTTGCCAATCTTTAGAGAATATGACCACAAGCAGCACCAAGCCAGTTCACGAGTGTTTGTTTTGCCCACAAACATTTGATAGCGCGGCAACAAAAGATGACCATGTTCTGGAACATTTTGCCCAAGAGACTTGTActgaatgcaatcaaaatttgattcgGATCGGTAGCACCTTGTATGCTCCACACACAGCTACAACTTGCATCAAAATCGAAGTGAAATCAGAAGTGAACGACCAGCTGAATTTTGACACACCTTTTGCTTCAACAAATATTAACCAATATGATTCGTGTAATGTAATTGGCGAAGAACACCAGACTACGGAGGAAACCCCAAGTATAACAGCAATCCATTTggatgaaattcaaataaaagatGAAATCGATCTGGAATATGAATCATCAAACACACTCGAAAGCTGTAATGACTTCAACGATCAAGCGAGTTGTTCAAATGAACGAGATGCGAGTGAGATTCCATTAAGCGAATTACAAAAACCCCAAGTTGATGGGACCAATAAACCCAATATTGATCGGCCCCATGTTCGCAAACAACAATCTAAAAGATATCCAGTAATCTGTGATATTTGTAAAAAGGTTCTCAGCTGTAAATCTGCACTTCGTACACACACATCTCTGATGCACGGTCCACcaagtgaattgaaatgtcaaatgtgtAACATGACATTCCGATTGAAAGAATCATCGCTTCATTCGCACAGCTGCAAAAGACCACCAATGGAATTACCGTGTAATATTTGTCGAAAGGTGCTCAGCAGCCGAAAAACATTACGCCAGCATATCATCAAATACCATAATTCAACCGAAATCATAACTTGCGGTGATTGTGCCTAA
- Protein Sequence
- MEHQTEHVAEVEYKTNKAVPMDDISNQNRFEDETVTVFSILATNELDNIQTMANPIVRLHMPKIEMDLKESDCFPCDQFQNESDPDEDTANIDTLKMNNVRKSDQNQLNMNDIFNKEKKIQMETRLHFDHFKCDICKSMLKNFETLRKHMKRKHQPKSSAQNHLHKTKQPDPIPCEYCGMMLANKSSLRKHQVRHHSAPGTLFCKTCGKLFTDTKEHEMHMLKCIMKERIRQSKNSTELLCETCQKQFKTKRTLRKHKIMQHSAPGTLFCKVCVHQCLFCPQVFDSAASKDDHILEHFAQEVCTDCNQNLIRIGSNLYTLHNAVTCIKDVDKSEDAIKPCTSNYTILPSKNRYEPKYEVNGEVDSKTNDDTNIFEEILIKVESDEENDEQRSEYIVMDMNQLPDTKSLKIDSDLENECQPKSTAMDINHAPDHKEIKSDLEPSNEAQSNVSQDKNRLETPFEQIQIHECLFCPQTFDSAAAKDDHILQHFPQEMCMDCNQNLIRIGSNLYTLHDTITCIKRDLKTESNEETHLANKPLLSHSTQYGPPDTICREPIYPMPTICTEAEIKPEPPEHVEHSDTLEETNYLHQSSDFPTESHNDNLIVEPIMVSVELPVKSEFFDEHEEYNQITDDNDDDDDDNDDDYDNQSAIIHSNLNDTQQHSKDATELVIQKKKIVGKHAACDVCGKVMLATSLYNHVRYAHQTTTNEYKCEPCKKRFKTADILRKHMRMKHDPTVEKFKCKLCCLVFLKEATLRAHPCKRKMGQTPKSDPMPCDICGKMLGSKLSLKKHKTLMHSPPGTIYCNVCGRLFSVIEDRDEHQTECAEKRKNRSSAAGFNSKPLRCDDCRKEFKTLGTFRSHMRMKHDPTVKKFKCKLCCLVFLREASLRAHRCKREMGETPKSDPVPCDICVHECLFCPQTFDSAAAKDDHILQHFPQEICMDCNQNLIRIGSKLYTSHNVTTCIKRDLKTESNEETHLTNQPLLSHSNQYGPPDTICREPIYPIPTICTEAEIKPEPPEHVEHSDTLEETNYLHQSSDFPTESHNDNIIVEPVMVSVELPVKSEFFDEREEYNQITDDDDDDCDNRSGLKHSHLHEIRKQSRDKTGEVNRKEKIVGEHAACDVCGKVMLAHSLYYHIRNVHRTTKEFKCEPCRKRFKTADYLRKHMRMKHDPSVKKFKCKLCCLVFLKETSLRAHQCRREMGEKPKSDPMPCDICGKMLGSKSSLKTHKTLLHSPPGTIFCNICGRLFSEIEDRDEHRSKCADKRKNRSSAAGFNSKPIRCDDCRKEFKNAENLRKHMRMKHDPSVKKFKFHECLFCPQTFDSAAAKDDHILQHFPQEMCMDCNKNLIRIGSNLYTLHDTITCIKRDLKTESNEETHLANKPLLSHSTQYGPPDTICREPIYPMPTICTEAEIKPEPPEHVEHSDTLEETNYLHQSSDFPTESHNDNIVVEPVMVSVELPVKSEFFDEREEYNQITDDDDDDCDNRSGLKHSHLHEIRKQSRDKTGEVNRKEKIVGEHAACDVCGKVMLAHSLYYHIRNVHRTTKEFKCEPCRKRFKTAEILRKHMRMKHDPSVKKFKCKLCCLVFMKEATLRAHLCKREMGEPPKTDPMPCDICGKMLGSKLSLRKHKILLHSPPGTIFCNVCGRLFCEIEDRDGHRIECARKQKNRSLKFFKTRSNNKEMTCDEPSSLVDDSHTISQTSDQSNSIEQHEDKKNRKRKFTEDHSECKICGKLLHASSIYSHMKNVHSATGLNSKPIRCDDCRKEFKNAENLRKHMRMKHDPTVKKFKCEHCCRVFVQENSLENHNCSRKMGKTVEKTNATIPCEICGKILSSKGALQRHQVLLHTSPETIFCNVCGRKFSNTEDRDVHREDCALKSHNRKSKAFSELGCFICNTKFMSNDALRHHIEMKHENCEKFEYINQYDSCNVTSEEHQTTEGTPSITAIHLDEIQIKDEIDLEYESSNTLESCNDFDEQASCSNERDASEIPSSKLQNPQVDGTDQINNCKPQRKGDPVICDICKKVLCSKSALQWHHICMHGPPKEFNCHICDRTFRLKANLGKHMRALHDPSANKLKCKKCSRIYATEYTLQTHSCRKPPMPCNVCGKVLSSPTTLRTHIIRCQSLENMTTSSTKPVHECLFCPQTFDSAATKDDHVLEHFAQETCTECNQNLIRIGSTLYAPHTATTCIKIEVKSEVNDQLNFDTPFASTNINQYDSCNVIGEEHQTTEETPSITAIHLDEIQIKDEIDLEYESSNTLESCNDFNDQASCSNERDASEIPLSELQKPQVDGTNKPNIDRPHVRKQQSKRYPVICDICKKVLSCKSALRTHTSLMHGPPSELKCQMCNMTFRLKESSLHSHSCKRPPMELPCNICRKVLSSRKTLRQHIIKYHNSTEIITCGDCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -