Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: sgt2
Assembly: GCA_030463065.1
Location: CM059998.1:37265923-37270346[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00017 0.0096 16.5 1.3 2 23 295 317 294 317 0.96

2 14 0.0006 0.033 14.8 4.2 1 23 342 364 342 364 0.99

3 14 1.9e-06 0.0001 22.7 1.8 1 23 396 418 396 418 0.98

4 14 3.4e-05 0.0019 18.7 3.0 1 23 425 447 425 447 0.97

5 14 0.04 2.2 9.0 0.7 3 23 455 475 453 475 0.96

6 14 1.7e-05 0.00093 19.7 1.2 1 23 481 503 481 503 0.99

7 14 1.2e-05 0.00066 20.1 2.1 1 23 509 531 509 531 0.98

8 14 0.00035 0.019 15.5 5.5 1 23 537 560 537 560 0.96

9 14 0.0026 0.14 12.8 7.6 1 23 867 889 867 889 0.99

10 14 0.0014 0.08 13.6 0.4 1 23 895 918 895 918 0.96

11 14 0.00086 0.048 14.3 9.8 1 23 924 948 924 948 0.98

12 14 0.00021 0.012 16.2 0.2 1 23 954 976 954 976 0.98

13 14 0.023 1.3 9.8 5.2 1 23 982 1004 982 1004 0.98

14 14 0.00039 0.022 15.4 4.8 1 23 1010 1033 1010 1033 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00017	0.0096	16.5	1.3	2	23	295	317	294	317	0.96
2	14	0.0006	0.033	14.8	4.2	1	23	342	364	342	364	0.99
3	14	1.9e-06	0.0001	22.7	1.8	1	23	396	418	396	418	0.98
4	14	3.4e-05	0.0019	18.7	3.0	1	23	425	447	425	447	0.97
5	14	0.04	2.2	9.0	0.7	3	23	455	475	453	475	0.96
6	14	1.7e-05	0.00093	19.7	1.2	1	23	481	503	481	503	0.99
7	14	1.2e-05	0.00066	20.1	2.1	1	23	509	531	509	531	0.98
8	14	0.00035	0.019	15.5	5.5	1	23	537	560	537	560	0.96
9	14	0.0026	0.14	12.8	7.6	1	23	867	889	867	889	0.99
10	14	0.0014	0.08	13.6	0.4	1	23	895	918	895	918	0.96
11	14	0.00086	0.048	14.3	9.8	1	23	924	948	924	948	0.98
12	14	0.00021	0.012	16.2	0.2	1	23	954	976	954	976	0.98
13	14	0.023	1.3	9.8	5.2	1	23	982	1004	982	1004	0.98
14	14	0.00039	0.022	15.4	4.8	1	23	1010	1033	1010	1033	0.97

Sequence Information

Coding Sequence: ATGCATCGCCAACAATCGCTGTGCTTGGGCAAAGATGAGGAAGATTTTCGGcaatttgaaacgaaaatcgatGAAGTATTACATTTGCTAAAAGGAATGAATAGTATCGATCGTAAATGTCAAAGCTCTATTCCAAATTCAGCCAAAGAGAAACTATCAAAAGATGATTTTCTTGTGAAAATACGGGATAATCGAACggttataaataaaaaggATCCGTCAACGAATAACAATGAAATGTCCAAAGCTACATTTATGACAGAAGTTGAACGAGATGCAGCAAAACGGGCTGAGGAACGTAAGCAACGTGAAGCAGTAGCACAAAATTTACGAAaaATAGGTAATGATGCTTTTCGAAATGGTGAATATGAAAAAGCCATTAGCATGTACTCAAAAGCAATAGATCACGTTAAAGATAGTCCAGTTCTATATAACAATCGAGCTTTAACTTATATCCGATTGGGTCTCTTCAAGAAGGCGGTCATCGATGTTGATTTCGTGCTACAAAAATTGGATGAGAAAAATATCCGATCATGGTTGTATCGTGCCAAAAGCTATTATTTGCTTGGTGAAACCAGAGATTTTGAAAAGAGCgtaaatgaagcaaaaaagaaCAATCCCAAAGATTTGGAGTTCATTGAGAAAACGTGtgatttggttgaaattaGTCGGATGATGGATTTGCTAACGCCAAAACTGGAACTATTTACCGATCATGAGTCGATGATTGGTGACAAACAGAATGATAACAAGGATTGGAATATAAATTTAAGATCGCGAACATTCAATGATTCGAGCATACAATGTACCAGCAAGAATAAAACCATCAATGTGAAAACTGGTAAAAAACCACCaatcaaaaaatacaaaaagaaacgTCAACAATGTCCAAAATGTTCGATAACATATTCAAAGCGCGAGTACTTATCCAAGCACATGAAAAATGAGCACAATATTATTTTGGAGAAAAAACGGCCCGGACGACAATCAGCGTTTAAGGTGAACGACAATGATCCGCGCCCGTACAAATGTGATCAATGTGTTAAAGAGtatatgaaatcaaaacatttggcACGGCATCGGCGTACACATTCAGAAAAGCGACGTTGCAATGAATGTAATGAGATTTGTGGCAATTATGCGGATCATATGCTTAAAAAGCATGGTATCGATTTGCCCAGACCATttgaatgtgatatttgtaaaaaaacGTATCGAactaaaacaaacattcaatcaCATATGCGCATTCATCGGGCGGCTAGTCGCATTTTTGCCTGTACAATTTGCCCAAAAACGTTTTGTTTTGGCACGGATTTGCGAAAGCATATGAAAAGCCATAGTCAAAATCGTTCAATAATATGTGATATATGCGGTGATGCGTTTAAATCGGTTGATACGCTTAAAtGCCATTTGAGACGGCATACTGGTGAACGGCCCTACAAATGttCGCAGTGTCCACGAGCGTTTAGCACAAGCAATAGCCTGGACATCCATTTTCGGACGCATACTGGAGAACgtccatttcaatgtgaattttgcCAAAAGCGTTTTAGTGATTCATCAACGTTGCTCGTGCACAAGAGATTGCATACGAACGAAAATCCATACATTTGCCATTTGTGCGGTAGACGCACAAAACAAGCCAGCAATTTACGATCGCATTATAAACATTTCCATAAGAATAATGACATAACTGGTCGACAGATACGCCTGAACTCTCGtatattcaatcgatttacGCAAACCGAACTCGATGCACAATTACAAGAGTCGGGTGATCTAATGGCGCTATTGGAAAAAGGACTTCAGGAATTTCATCGTgaagaaagcgaaaaaaatagtcaaattGAAAAGGCGTTAAAGGAAAGTATCAAGGCACCACACCAAGTGCGCCAACCGATGCAAACGGGCTCAAATGCAGCTAAATCAGATCTCGAAATTCAAAGTGTACAAAGTATTCCGGATTTTCCCGCTATTTCTGCCACTTCAGAGCCATCAGAAGATGATATCAAAGTAAAGGTAGAAGATAACGAAATCAAtgtattcaatcaaacgccagtcgtcaattcaattggaaaaacaTTGATATCCCATGCAAAATACACATCACACAGTCCAAATCATGAATATTCACATGACATAAAAGACATTCagccaaaaattgaaagtgtaTTCCTTGAGGATCTGGAATATCAATCGCCAGAAATCGTAAATTGCACACTTGaacatattaaaaatgaagATGATTTTGACGATGCAAGTTGGCACCGTGATAATTATGAAGACTCATCAAATGAACCATTTGGTATAGTTGATATTGAGACAATCATCACTGAAACGGCCAAATCAGCTGAAGTACTGTGCAATGGGACAAAACCGAGTGCGATAGCAACTACAATTTTGgatgataaaaaaatggaatgtaaaAGTGACGATGATGAATTCGATGATAATACCAATAATATACAACAAAAGAATTCAACACCTAAAGTTCACGTTCCAAAGGCTGAGGTCGAAAGGTGCATTCCATGCAATCGAAAGTTTCATGATATGGCAAAGCATTGGGTACAGTATCACTCAGGCATTGAACGACCGTACGAATGTTTCATTTGCCATAAAAACTATAAACGTTATGAGCATATAAAATATCATATGAAGACACACGGTGATGAACGCAACTATATTTGTCACGTATGTGGTGATGCATTTGTCTTAAGCAATGAACTGAGAAAGCATATTATGAATCGGCATCAGGTCGAACGACCGTTCAAATGTACCCATCAGCAATGTAAGAAATGCTTTAAAAATCAACATGCACTTAATGTTCACACACGTACACATTCTGGTGTCAAACCATATGTTTGTGCGGTTTGCTCGGAATCATTCTCAGCGCTGTCCTCGTTGAAAATCCATGAGCGAAAACACACGGGCGAAAAGCCTTACGTGTGCAAATATTGTTTCAAAGCGTTTGCTGATTGTTCGACGCACAAACAGCATGTTCGAATTCACACCGGTGACAAACCATACAAGTGCCACTTGTGTGATCGTCGCACAGCACAAGCCGGTAATTTAAAGTCACATTATCGACATTATCATAAAATTATTGTGAAAAGTGTTAGCATGTATGTGGACCATTCAACGGTACCATTTGCTGAAGAAATCCCTAGAAATCCATACGAACGTGATCATAGCATTGCCGCTTATCCTTTATTCGATCCAACGCGGCGAATCGAAGAATAG
Protein Sequence: MHRQQSLCLGKDEEDFRQFETKIDEVLHLLKGMNSIDRKCQSSIPNSAKEKLSKDDFLVKIRDNRTVINKKDPSTNNNEMSKATFMTEVERDAAKRAEERKQREAVAQNLRKIGNDAFRNGEYEKAISMYSKAIDHVKDSPVLYNNRALTYIRLGLFKKAVIDVDFVLQKLDEKNIRSWLYRAKSYYLLGETRDFEKSVNEAKKNNPKDLEFIEKTCDLVEISRMMDLLTPKLELFTDHESMIGDKQNDNKDWNINLRSRTFNDSSIQCTSKNKTINVKTGKKPPIKKYKKKRQQCPKCSITYSKREYLSKHMKNEHNIILEKKRPGRQSAFKVNDNDPRPYKCDQCVKEYMKSKHLARHRRTHSEKRRCNECNEICGNYADHMLKKHGIDLPRPFECDICKKTYRTKTNIQSHMRIHRAASRIFACTICPKTFCFGTDLRKHMKSHSQNRSIICDICGDAFKSVDTLKCHLRRHTGERPYKCSQCPRAFSTSNSLDIHFRTHTGERPFQCEFCQKRFSDSSTLLVHKRLHTNENPYICHLCGRRTKQASNLRSHYKHFHKNNDITGRQIRLNSRIFNRFTQTELDAQLQESGDLMALLEKGLQEFHREESEKNSQIEKALKESIKAPHQVRQPMQTGSNAAKSDLEIQSVQSIPDFPAISATSEPSEDDIKVKVEDNEINVFNQTPVVNSIGKTLISHAKYTSHSPNHEYSHDIKDIQPKIESVFLEDLEYQSPEIVNCTLEHIKNEDDFDDASWHRDNYEDSSNEPFGIVDIETIITETAKSAEVLCNGTKPSAIATTILDDKKMECKSDDDEFDDNTNNIQQKNSTPKVHVPKAEVERCIPCNRKFHDMAKHWVQYHSGIERPYECFICHKNYKRYEHIKYHMKTHGDERNYICHVCGDAFVLSNELRKHIMNRHQVERPFKCTHQQCKKCFKNQHALNVHTRTHSGVKPYVCAVCSESFSALSSLKIHERKHTGEKPYVCKYCFKAFADCSTHKQHVRIHTGDKPYKCHLCDRRTAQAGNLKSHYRHYHKIIVKSVSMYVDHSTVPFAEEIPRNPYERDHSIAAYPLFDPTRRIEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -