Aaph006849.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidoletes aphidimyza
Gene Symbol
-
Assembly
GCA_030463065.1
Location
CM059997.1:24590793-24593766[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0015 0.083 13.5 0.2 1 23 372 394 372 394 0.96
2 12 7.2e-05 0.004 17.7 0.7 1 23 403 425 403 425 0.99
3 12 0.00018 0.0097 16.4 0.3 2 23 433 454 432 454 0.96
4 12 9.1e-08 5.1e-06 26.8 1.5 1 23 460 482 460 482 0.99
5 12 1.3e-07 7.4e-06 26.3 1.8 1 23 489 511 489 511 0.99
6 12 1.2e-05 0.00065 20.1 0.9 1 23 517 539 517 539 0.97
7 12 5.7e-05 0.0032 18.0 0.3 1 23 545 567 545 567 0.98
8 12 2e-05 0.0011 19.4 0.7 1 23 573 596 573 596 0.96
9 12 3.9e-05 0.0022 18.5 2.2 1 23 602 625 602 625 0.96
10 12 0.00095 0.053 14.1 2.2 1 23 631 653 631 653 0.99
11 12 3.6e-05 0.002 18.6 0.6 1 23 659 681 659 681 0.96
12 12 0.0011 0.06 14.0 0.3 1 21 687 707 687 711 0.92

Sequence Information

Coding Sequence
ATGAATCCAACATTTAAGACTGTGTCAAGGGCTAGCTTGACAACAGCCCGTcataaaaattgctttttatgTGATGCACATTTACAAAGTGCTCATGTACGTAATATCGATCAACTATTCTATGATCCAAAAAATAATGCCGACCAGTCAAAATCTTTGGCCACAATTTTATCGGATATTTTGgaacaaaatattgaagagCCAACCGTACattcgaaaattgtatgcCGAAAATGTCAACAACAGTGCATCGAATACGATCAATTAGCAACGAAATTACTTGAACTACgtcaaaatatcacaaataatttcaatgaaacggCCAATAAGTATAATTTAAAGGTCATCGATATGGATTTGGATCAAAATTTCGAAACGATCAACGATGGTGATGATAATAGTATTCCAAATATGTATGCAATTGAATCGGTTGATTCGACCATTGGCGAAGTGTTCAATAATGAGAATGTAAACAGCAATGATGTTGGAAAAAgtacacaaatgaaaaaagtcatGCTAATTAAAGGTGAAAATGGATCGAGTCCATTTTTTGCGATTTCTGGAATGGACGAAAGCATTGATGATGATCAAGCTATTCATACGGTGCTGTTGGAAGAAATCAATGAGTCAACCGAATTCGGTGATAGtgcaacaaatacaaatgatgGAATCAGTGAGGATCCTGACCATCATGATGCCAGCGAGCAATATATTGTGGCCGAGCATTTGGACGATGTCAAAGAGTATTTTGAAGCAAACGGCgatcaaatgattgaaattagTACAAATGGTGAAATTGGCGATTCAAATTACCAGTATATCTTTCAAGAAGACAGTACCGAAGAGccagatgatgatgaagaaaacTCCTCTGAAATGCCGGATTCGAAAGCATTTGATACagcatatttgaaaaatgatgatggtAGTGTTACATTTGCCGTTAAAACATCAACACGCTCATCAAAAAAAGGCAATGCTGATGAAGGAAAGGAGCTATTTTTTCGGGATGGTAAAAAATTCCAATGTTTATTGTGTACACCAGCCTCATTGGTTGTATACGATCCAAAGACCATatcaattcacttgaaaacgGATCACAATGAACGGGTTTATGTGTGCAGTATATGCGGTATGGATTTCCGAAAAAGAAATCCATACAATGATCATATGGACGAGCACATGGCGGCCACCGCCGAAGGTACATACGAATGCGAAGTGTGCAAAGAAATTTTCGCTGATTCACGTCAATTTCGTATACACAAGAAAACACACACGGCCAGCATAAAAATTTGGCCATGCAAAGCGTGCGGCAAAAAATATAGCTCAAAGAATCTATTGGATGAGCATATGAATATGCATACAGGCGCTCGACCATACAAATGTCCCCACTGTCCAAAAGATTTTGCATCGAAGTATACATTAACCGCTCATATGAAAATCCACTACGATCGTAAGCGACCGTTCGAATGCAAAGAATGTGGCAAATCATTTTTCAGCAATCAAAATCTTACCCAACATGTTCGTACACATACTGGCGTTAAGGAGTATGAATGTGAGgtatgcaataaaaaattcgGTTCCCAGCATAATTTGGAAGTGCATAAAATTGTACATACGGGCCACAAACCATTCATTTGTCGAACGTGTGGCAAAGCTTTTGCGCGGCGAGCTGAAATTAAAGACCATGAACGTACTCACACTGGAGAACGCCCATACAAATGTGATATGTGTCCATCAAGTTTTGCGCAACGCTCGAATTTGATGTCACACAAACGAgccacacatttcaatgataaacGATACAAATGCGAAACATGCTCGCGATCATTTAAACGTCGACGTCTTTTGGAATATCACATAAAAGCCACACACACGGGAGaacgTCCATATAAATGTGCCACCTGTCTTTCCACCTTCGTTTATCCCGAACACTATAAGAAACATATTCGAATTCATACTGGTGTGAAACCATTTGCTTGTGAGGTGTGCGGCAAAACGTTCAACAGTCGTGATAATCGTAATGCTCATCGTTTTGTTCACAGCGATAAAAAACCGTATGAATGTACGGTGTGCCATCAGGGATTCATGCGAAAGCCATTGCTATTGGCTCACATGGAAGCGCAACAACActtaaacaatcaaatcattgtgaatcaaccaaatttcaaaaaggataataataatttacaaaCCGATCAAACCAATGAAACAGATGATAATGATATCGTGTATCTCAGTATGAATGATGAAGAATTTATGGACGATGACGAATTCACACTAGAAGAAGAGCACATCGTGGATGATGCAGAAATTATCAAAGAAGAGGATCTTATGAGCGATAGTCAGTTTAGTGGTAATGGAAATGATACAAGTGACTCATCAAATCGTGTCGATAAGCAATTTCTGATACGTCAAAAACGACAAAATCTATCGAACATCGATGACTTAGCCGACAACATGAAGGATGCTGATGCTGTAACATATATCGAAACATCCGAAGTTGATCCGGATGATCCGTTAAGTCTTGAACAAATTTGTGTGCCCGTCGAAGGCGATAATGTATCATGGATCGGTCTAACATCGTAA
Protein Sequence
MNPTFKTVSRASLTTARHKNCFLCDAHLQSAHVRNIDQLFYDPKNNADQSKSLATILSDILEQNIEEPTVHSKIVCRKCQQQCIEYDQLATKLLELRQNITNNFNETANKYNLKVIDMDLDQNFETINDGDDNSIPNMYAIESVDSTIGEVFNNENVNSNDVGKSTQMKKVMLIKGENGSSPFFAISGMDESIDDDQAIHTVLLEEINESTEFGDSATNTNDGISEDPDHHDASEQYIVAEHLDDVKEYFEANGDQMIEISTNGEIGDSNYQYIFQEDSTEEPDDDEENSSEMPDSKAFDTAYLKNDDGSVTFAVKTSTRSSKKGNADEGKELFFRDGKKFQCLLCTPASLVVYDPKTISIHLKTDHNERVYVCSICGMDFRKRNPYNDHMDEHMAATAEGTYECEVCKEIFADSRQFRIHKKTHTASIKIWPCKACGKKYSSKNLLDEHMNMHTGARPYKCPHCPKDFASKYTLTAHMKIHYDRKRPFECKECGKSFFSNQNLTQHVRTHTGVKEYECEVCNKKFGSQHNLEVHKIVHTGHKPFICRTCGKAFARRAEIKDHERTHTGERPYKCDMCPSSFAQRSNLMSHKRATHFNDKRYKCETCSRSFKRRRLLEYHIKATHTGERPYKCATCLSTFVYPEHYKKHIRIHTGVKPFACEVCGKTFNSRDNRNAHRFVHSDKKPYECTVCHQGFMRKPLLLAHMEAQQHLNNQIIVNQPNFKKDNNNLQTDQTNETDDNDIVYLSMNDEEFMDDDEFTLEEEHIVDDAEIIKEEDLMSDSQFSGNGNDTSDSSNRVDKQFLIRQKRQNLSNIDDLADNMKDADAVTYIETSEVDPDDPLSLEQICVPVEGDNVSWIGLTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01350979;
90% Identity
-
80% Identity
-