Aaph013657.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:11395499-11398291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.027 1.5 9.6 1.4 1 23 119 142 119 142 0.97 2 18 0.065 3.6 8.4 4.9 2 22 149 169 148 169 0.95 3 18 0.019 1 10.1 0.3 1 23 191 214 191 214 0.95 4 18 0.00028 0.016 15.8 1.5 1 23 220 242 220 242 0.99 5 18 0.0004 0.022 15.3 0.1 1 23 279 302 279 302 0.94 6 18 5e-05 0.0028 18.2 2.8 1 23 308 330 308 330 0.98 7 18 0.00014 0.0076 16.8 1.8 2 23 369 391 368 391 0.95 8 18 5.6e-05 0.0031 18.0 3.8 1 23 397 419 397 419 0.99 9 18 0.014 0.79 10.4 4.0 1 23 458 481 458 481 0.96 10 18 4.7e-06 0.00026 21.4 2.8 1 23 487 509 487 509 0.98 11 18 0.0005 0.028 15.0 0.1 1 23 545 568 545 568 0.96 12 18 0.00041 0.023 15.3 6.3 1 23 575 597 575 597 0.98 13 18 0.00083 0.046 14.3 0.7 2 23 631 653 630 653 0.95 14 18 1.2e-05 0.00066 20.1 4.6 2 23 662 684 662 684 0.97 15 18 0.0013 0.072 13.7 0.5 2 23 700 721 699 721 0.97 16 18 0.00022 0.012 16.1 2.8 2 23 727 749 726 749 0.96 17 18 0.0009 0.05 14.2 1.6 1 23 755 780 755 780 0.96 18 18 0.024 1.3 9.7 0.7 3 23 789 810 788 810 0.89
Sequence Information
- Coding Sequence
- ATGACAGCTCTCTTAGGTAATTTTGAGCCTCCTCCACTGGAGTCGATCAAACAAGGTGCTGTTGTAATCAAACAGGAGCCGGCCAATGAGCTGGAATCCGATCAACTTGATGAACCATTAAATGTTAAAACTGATGtcgatttcaataattttgggGAGATTTTTACGGCAAACCTTAGCACAAGCATCGaaacaaatgacaacaatACAGTAAATGCAACACTGCCACAAcacaatgatgatgaaatgcaCTTTTTAAGCAGTTTGAATTCTCAATACACGTTCAATGTGATCAATGTGAAagaattgaacaattcaacaaattccaGTGAGTTAAATCGACGCACAAAAGGGTTTCAATGTCgattttgtgataaaatttTGAGTTCTCGTTTCCGGCTTGATGCGCATCTTCAGAGCTATCATGATCCACGAAATCAAACCCGTTGCAAACACTGCaatcgttcatttcattcatttgaacgtTTGGATAAACACCTGCGACGCTGCGTTCGGAATAATAGAAAACGCGAATACATCCGAGGACATCCACATCGTCCAGCGGGTAATTTCATCTGTGATATTTGTGGCAGTACGCTAAAAAAGTTTCGCACACTACTCGATCACATGAACGAAGTACATTCGACAACGTTTTCATTCAAGTGTCGAATATGTGAGAAATTGTATCCGAGTCGTTATTACCTTGCGAAACACTTAAACCGACATAAGCTGGTTTTCGATAACCAACATAATCAAGCCGCCGGTGATTTAGACGATGATTtgattgagagaaaaaaatacgttcGAAATCATCCCCATCGACCTCAAATGGATTATATGTGTGATATTTGCGGCAAAGCCATAAAACGTTTCGAACTTTTGGAAGAGCACATGAGTGCATTCCATTCGGCTCGTGATAGTTTTCAATGTAGAATATGTGGACGATGCTATCCAAATCGTTACTATTTGAGCAAACATGTTGCTCGTCACAAAGATGCCACGGCAGCTAACATTAACGAATGTGCCGATGATCTGGACAAAGGTTTAATGGaacgaaacaaatacaatcgaTCGTGCAATCCGAAGCAACGCGAAATCAATTTGACTTGTGATGAATGTGGTCGGATATTCAAGCATAACTATCTCTTGTTGGAGCACAAAAACTCGAAACACTCAGGCGCGAGCACATTTCAGTGTAGAAAATGTGGCAGATATTATCCAAATCGCTATTACTTAACGAAACATTTGAAACGCCATGAGGATGCTGAAAAGAATGGCGTTCCATTCGATCAACTTGGTAACGATTTGGATGAAGGTTTGATGGAGAGGAATAGATATGTGCGATCGGATCCAAACGAAGATAAAACATCATTCGATTGTGAAGAGTGCGGGAGCACTTTTAAGAAATTCTGTTTGCTAACAGAGCATAAACGGTCAAAACATTCCTACGATAATGGTTTTCCGTGTAGAAAATGCGGTCGACGTTATCCAAACCGGTATTATTTGACTAAGCATATGAAGCGTCACcaaaataatgatgaaaaccaaaatctGGACTCATCAGAtgatgattcaattgaattcgaacgAAAGCCAAACGTTCAAAATCATCCACATCAACCAAAATCAGAATTTACGTGCGAAGATTGTGGAATGATATACAATACATTCGAATTGCTTGAGGAGCACATTACATCGAATCATTCAAACAAAGCAGCCGGTTTTATGTGCCGGATATGCAGTCGCGTGTGTCCCAATCGACACTCTCTTCGAAAGCATATGAAGAAACATCAAACTAAGAggaaagaagaagatgaaaattTGGATGAGGATCTAATGGAACGGTCTAAATACATAAGAGCGCATCCACATCGTCCAACCTCCAATCTTACTTGTGATATTTGCCAAAAGGTTCTATCCAACTACTATTCAATGAAAGATCACATGTCTTCGAAGCACTCTGGCAAAACAAAAGTAAAGcgcaaatgcacaaaatgtaataaaacatttgtatcgaaaaaatcacttgaaaagcATCAAAGACAAAAGCATACGGATGATCCTGAGGCGATCAAATCAAAAgttgaaaccaaacaaatgtgttcaatttgtGGCCGACTTTTTCCCGACCGATCGAAAATGCTTTCACACGAGAAAACACACTTCGGCATAATGACATCGTGTGATATTTGTGGCAAGAAGTTTTTGCACAAAAACTATCTGCGAAAGCATATCAAAAGTGTTCATGCACGCGTCCGACCATTTAGTTGTAATGTTGATGGATGCAAATGGACATTCGCGTATCCCCAGTGCTTAAAGCGACATCAGGCTCGACGGCATGGCATGGTCACACATCGAAATGCGTGCCCGATTTGCTCCAAAGAATTTCCCGACAGTACTTATCATCTTAAACGTCACTTGAAAGCGCATGCAAATAATACAGCCAAAGAGTACATTCCAGAACCGAAGCCAGGTGCACAGCCAACAGCATAA
- Protein Sequence
- MTALLGNFEPPPLESIKQGAVVIKQEPANELESDQLDEPLNVKTDVDFNNFGEIFTANLSTSIETNDNNTVNATLPQHNDDEMHFLSSLNSQYTFNVINVKELNNSTNSSELNRRTKGFQCRFCDKILSSRFRLDAHLQSYHDPRNQTRCKHCNRSFHSFERLDKHLRRCVRNNRKREYIRGHPHRPAGNFICDICGSTLKKFRTLLDHMNEVHSTTFSFKCRICEKLYPSRYYLAKHLNRHKLVFDNQHNQAAGDLDDDLIERKKYVRNHPHRPQMDYMCDICGKAIKRFELLEEHMSAFHSARDSFQCRICGRCYPNRYYLSKHVARHKDATAANINECADDLDKGLMERNKYNRSCNPKQREINLTCDECGRIFKHNYLLLEHKNSKHSGASTFQCRKCGRYYPNRYYLTKHLKRHEDAEKNGVPFDQLGNDLDEGLMERNRYVRSDPNEDKTSFDCEECGSTFKKFCLLTEHKRSKHSYDNGFPCRKCGRRYPNRYYLTKHMKRHQNNDENQNLDSSDDDSIEFERKPNVQNHPHQPKSEFTCEDCGMIYNTFELLEEHITSNHSNKAAGFMCRICSRVCPNRHSLRKHMKKHQTKRKEEDENLDEDLMERSKYIRAHPHRPTSNLTCDICQKVLSNYYSMKDHMSSKHSGKTKVKRKCTKCNKTFVSKKSLEKHQRQKHTDDPEAIKSKVETKQMCSICGRLFPDRSKMLSHEKTHFGIMTSCDICGKKFLHKNYLRKHIKSVHARVRPFSCNVDGCKWTFAYPQCLKRHQARRHGMVTHRNACPICSKEFPDSTYHLKRHLKAHANNTAKEYIPEPKPGAQPTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -