Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059996.1:4726051-4727745[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2 67 4.4 0.1 1 23 40 63 40 63 0.93

2 12 4.2e-05 0.0023 18.4 0.3 1 23 217 239 217 239 0.99

3 12 5.6e-06 0.00031 21.1 4.4 1 23 245 267 245 267 0.99

4 12 4.6e-08 2.6e-06 27.7 1.8 1 23 273 295 273 295 0.99

5 12 2.3e-06 0.00013 22.3 0.7 1 23 301 323 301 323 0.98

6 12 1.9e-06 0.0001 22.7 0.2 1 23 329 351 329 351 0.98

7 12 1.3e-05 0.00073 20.0 1.5 1 23 357 379 357 379 0.99

8 12 2.2e-07 1.2e-05 25.6 1.2 1 23 385 407 385 407 0.99

9 12 1.6e-06 9e-05 22.8 4.1 1 23 413 435 413 435 0.98

10 12 9.1e-07 5.1e-05 23.6 4.9 1 23 442 464 442 464 0.97

11 12 7.8e-06 0.00043 20.7 0.9 1 23 469 492 469 492 0.93

12 12 0.68 38 5.2 0.1 3 23 505 525 504 525 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2	67	4.4	0.1	1	23	40	63	40	63	0.93
2	12	4.2e-05	0.0023	18.4	0.3	1	23	217	239	217	239	0.99
3	12	5.6e-06	0.00031	21.1	4.4	1	23	245	267	245	267	0.99
4	12	4.6e-08	2.6e-06	27.7	1.8	1	23	273	295	273	295	0.99
5	12	2.3e-06	0.00013	22.3	0.7	1	23	301	323	301	323	0.98
6	12	1.9e-06	0.0001	22.7	0.2	1	23	329	351	329	351	0.98
7	12	1.3e-05	0.00073	20.0	1.5	1	23	357	379	357	379	0.99
8	12	2.2e-07	1.2e-05	25.6	1.2	1	23	385	407	385	407	0.99
9	12	1.6e-06	9e-05	22.8	4.1	1	23	413	435	413	435	0.98
10	12	9.1e-07	5.1e-05	23.6	4.9	1	23	442	464	442	464	0.97
11	12	7.8e-06	0.00043	20.7	0.9	1	23	469	492	469	492	0.93
12	12	0.68	38	5.2	0.1	3	23	505	525	504	525	0.90

Sequence Information

Coding Sequence: ATGGAAGTCCAAATTTCTCCTGGCCCACTATTTAACAGTAgtaatcaaaatataattcgATCAGCACCATCACAAGCATTTGAGCCATCATCAAAGCGTCTTAAATCGGACCTAACCTTCCAATGCATTGTATGCAGTGATGTTTACGATAATCCGAATTTGTTATATGAGCATATGATAAGCCAACATCGAGAGCTGTATGAATATGGTGATGATGGTGCAGGTGGAAGTGCTGGTGAAAATGGTTTCGAAAGTGATTCCGAGCATGAGCTCAGTGATGAAGAGTATCTTGATTTATCACGATTACTCGAGCCAATCTGTGAATTAAGACAGGAAGATGGTGATGATGAACCtcaaaatgccaatttcaattgccAACCCACAAATGTTATTGCACAATTGATGCAAAGTGGTCAAATGACTGAAGAGCAGATTCGACTTCAATTGCAATTACAAATGCAACTGCAAAATCACTTGTTACAACTACAAATGAATGGTGGCATGCAGCtaccaaaatgtgaaaatggtcTAAAACAAAGCAATGGTAACCTCAATAAAGGATTGTCATTACCACAAGGACCGGGACGGGGTCGTCGACGAGAGTTGGCTACACCAAAAGAAGTTGCTCTACCACCGGAATCCGGTTTATTTCAATGTACACAATGTGacagttcatttattttcgctGGTGACTTAGCAAAACATGTTCgatcgcacacacaaaataaaccgTACCAGTGTAGCATTTGTCAAAAATCGTTTACGCATATTGGAAGCTTATGTACACATTTACGCATTCATAGCGGTGAAAAACCGTATAAATGTAAACTATGCACCAAAGCATTCACGCAATCGTCCAGTTTAATGGTCCATATGCGATCACATGGTACAAAAAAACCGCATCAGTgtgaaatatgtgaaaaagGCTTTGTGAATTCGAGCAgtttaattttgcatttgaaatcaCATGCTGACGGTGATCCATTTCCATGTAAGGATTGTGACAAACGATTCAAATCGGCCACATTGCTTGCCGAACATCAACTGATACATACCGATACAAATTTATACCAATGTTCAATTTGCCGTGAGGCATTCAAACAGGCCTGTGAGTTGGTTCAACATTTGAAGACTCATACCggtgaaaaaccatttcagtGTTGCGTGTGTGAGAAGGCATTCACGCAACCTGGTAGTCTGCAAACGCACATGCGCATACATACGGGAGAAAAGccatttcattgcaaaaagtGCAATAAAACTTTCACCCAGGCATCAAGTCTATCGGTACATCAAAAAGTACATACGACGGAAaagcaacaattcaaatgccaACATTGTCCGAAATCCTACAGTCAACAATCTTATCTCAATAAACACATGCTCTTCCATAGCGGCAATAAATACACATGTAAATGGTGCAATAAACCATTTAGTGATTCGGCACAACTCATACATCATGTCACACAAGAACATGATGATTCTTCCAGTGGTGGCAATTCGGTTGCTGAATGCATTATTTGTCGCAAAGAATTCACCAGTGCTCCAGCATTACTATTTCATTTACGTGAGCatgttgaaaatggtgaaCAGACACCGCGACAGGAGCAACCGTAA
Protein Sequence: MEVQISPGPLFNSSNQNIIRSAPSQAFEPSSKRLKSDLTFQCIVCSDVYDNPNLLYEHMISQHRELYEYGDDGAGGSAGENGFESDSEHELSDEEYLDLSRLLEPICELRQEDGDDEPQNANFNCQPTNVIAQLMQSGQMTEEQIRLQLQLQMQLQNHLLQLQMNGGMQLPKCENGLKQSNGNLNKGLSLPQGPGRGRRRELATPKEVALPPESGLFQCTQCDSSFIFAGDLAKHVRSHTQNKPYQCSICQKSFTHIGSLCTHLRIHSGEKPYKCKLCTKAFTQSSSLMVHMRSHGTKKPHQCEICEKGFVNSSSLILHLKSHADGDPFPCKDCDKRFKSATLLAEHQLIHTDTNLYQCSICREAFKQACELVQHLKTHTGEKPFQCCVCEKAFTQPGSLQTHMRIHTGEKPFHCKKCNKTFTQASSLSVHQKVHTTEKQQFKCQHCPKSYSQQSYLNKHMLFHSGNKYTCKWCNKPFSDSAQLIHHVTQEHDDSSSGGNSVAECIICRKEFTSAPALLFHLREHVENGEQTPRQEQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -