Aaph012601.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- Bcl11a
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:552301-556984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.1e-07 1.2e-05 25.6 1.7 1 23 143 165 143 165 0.98 2 20 2.5e-06 0.00014 22.2 3.8 1 23 171 194 171 194 0.96 3 20 0.00048 0.026 15.1 4.4 1 23 240 262 240 262 0.97 4 20 8.8e-07 4.9e-05 23.7 3.3 1 23 268 290 268 290 0.98 5 20 0.00033 0.019 15.6 0.7 2 23 297 319 296 319 0.94 6 20 5e-06 0.00028 21.3 0.4 1 23 341 363 341 363 0.98 7 20 0.0002 0.011 16.3 4.0 1 23 369 391 369 391 0.98 8 20 1.3e-05 0.0007 20.0 2.3 1 23 397 419 397 419 0.97 9 20 1.2e-05 0.00067 20.1 0.2 1 23 427 449 427 449 0.98 10 20 0.19 10 6.9 4.2 1 23 455 478 455 478 0.97 11 20 0.0052 0.29 11.8 2.9 1 21 514 534 514 535 0.97 12 20 0.72 40 5.1 5.0 1 23 649 671 649 671 0.96 13 20 0.0029 0.16 12.6 7.4 1 23 677 699 677 699 0.98 14 20 5.5e-06 0.00031 21.2 0.8 1 23 702 724 702 724 0.98 15 20 0.0013 0.074 13.7 1.7 3 23 734 755 732 755 0.97 16 20 0.0049 0.27 11.9 0.2 1 23 760 782 760 782 0.93 17 20 7.1e-08 3.9e-06 27.1 1.4 1 23 788 810 788 810 0.99 18 20 4.8e-06 0.00026 21.4 0.7 2 23 817 838 816 838 0.96 19 20 1e-05 0.00058 20.3 1.8 1 23 846 868 846 868 0.98 20 20 4e-05 0.0022 18.5 0.6 1 23 874 898 874 898 0.94
Sequence Information
- Coding Sequence
- ATGACGACATATTGTCGTTTGTGTGCTGAATCCAAAACGGATGATGAATTGAGCACTACAATAAGTGATtccaaattgaatataaaagaAAAGCTAGTCGTATGTTGCCAGTGGaataattatttaataaatagcCATCTTCCCGAGGGTGTTTGTATTTCATGTTGTGAAAAACTAGAAAAATGTTGGCTATTCAATGAAACGGTTGCCTTTGCGCAGGCAAAACTTCAAGAAATTTTTCACGATACCGATTTAGTAGCGGTAAAATGTGAACTAAATACGGAAGATGATGAAACTTGTTTATGTGATCCatcggaaaatatttttgttgagcCGATTACGTTACCTGAGCCAACAATCGATGACGAAAAGCGATTGATCGGATCAACAATCGATTCAGTGGATGAATCGAAATCTCGACAGTTTCATGAATGTGACATTTGCCAGAAGAGTTTTACTACTGCTTATAATTTGACGGTTCATAGACGGATTCACACGAACGAACGTCCCTACTGTTGTTTGAAGTGTGGAAAAAACTTTAAAAGTTcatcaaatttgaatcaaCATTTGCGACAAGTTCATGGCAAAGAGAAACCACATGGGGATGATGAGTCAAAGGACACCACAATCGAGCAAAATTCGGAGCCAAATGTAGAATCgaatttggaagaaaaaacTGTTTACGAACAGCAGTCATTGAATTCATCAGAATTTCAGTATGCATGCCATGAATGCGGCAGACGGTTTCGGTTGAAATGCACATTAACTGCTCATCGCACAATACACTCAAATGAACGACCGTTTGAGTGTTGGATGTGCCATAGATCGTTTAAACGGAGAAAGCTATTGAGAGCACACATGCGAATCCATACTCAGTATCCAACAATCGAGTGCAATATTTGTGGTAAACGTTTCCGACGAAATATTCAACGCGATAATCATATTAAAGAGAGGCATGGTGCACCAGTACCAAAGCGTGAGAAAAaaccaccaccatcaccaaAAGCACCGGTTCGAAAATTCACATGCGAATTATGTGGCATGAGTTTCACCCAGAGGGGTGGACTATTCACACATATGACTGTACACTCGGATCATCGACCGCACAAATGTGATATGTGTGGATTGGGATTTAAGCGTAAGCGCACCATGCAAGATCATCGCAAAACTCACACTCATGAACTCGAATACAAATgcaatcaatgtgaaaaagCATTTCGGAAGAAGATTAGTTTGCGTAGACACTTAGAGTACCACACCGGTTCGATAGTGAAGCCATTCATTTGCGATTTTTGTGGAAAAGCATTTCGGCTCAATGCCAATCTTGTGGAACATCGCCGAAttcatacaaatgaaaaaccatatttttgTGAACACTGCGCGTCAAATTTCCGCACAATGTCCAGTTTTTATAGTCATTTAAAGAAAGAACATGgTATTTCAGTATTAGCTCGTAAACTAGAAGAACAAGCTCGAGCAACAGCTATGTCAttcaaaaccaatcaaattctTCAAGCGCATTGCAAGAAACAGTCTGAATACAAATGTGACATTTGTTCGCAATTATTTTGCAAAGAAAAGGCATTGAAAAGACATCGGCGACAAGGATGCGAAGgtcatattgaaaatgtagaTATTCTGGAAGCAAAGCCCGCATTTGTTGATTGCAGTTCTGAGCTCAACGTGACATTGGAACAAGAACCAGAAATTCCAATTGGACTTGATGCCGTTTCTGTACAAGATGTGGTTGAtgttaataaaacaaattattccAAATGTGATAAAGAGGTAGAAAGACCCAATCCCGCATCGGCTTCACTTGAGTTTGAAACGTTGCCATTACGAGTGGAAATTAACGTAAACGAAAAACCGGATAGCATGAAGCGATATAAGAAATACGTATCTTTTGAAAAagatcattcaaatgaaaataacgacACAGATTATCATTGTTATTTATGTAACAGAAGATTCAAAAAATTACCCCTGTTGCGATGCCACATGGTTGTGCATACATTACCGCGTAAATATAAATGCCAGTATTGTAATTCACGTTTTCGCACTGAACGCCACTTTACATCGCATCAAAAGAACCATGTTGACTACTACTGTGATATATGTAATAAAAAATTCCCAAGTGCATTTGCACTCAAGGTGCATAAACGAATGCATGTGGGTGCTAGTGTAAAAATGTATGGATGCGAAGAATGTGACCATTTCTTTGTTGATGTTTCAACGTTTTATAATCATATGAGAAGACGACACGCTGCTAAACCGTATGTATGTGAGCAATGTGGGAAGGATTTTCTCGAGAGGAGTTCGTTAAAAGCTCATTCAGTAGTGCATTTGGATATTCGACCGTTTCAGTGTGAAGTGTGTCCAAAAGCgttcaaaaataaatacaatttgaaaacaCACCAAGAAACGCACACCGGTGAAAAATCCGTGCAATGCACTCAGTGTGGCAAAACGTACAGCAGAAAAAGTGTACTGCTAAAGCACATGGAGGAGCATACGGGTGTTTACACCAAAGTATTTCCGTGTGATTTTTGTGACAGAATCTTTAGATCATTATACAATATGCAAAACCATCGTCGAACACACACCGGGGAAAAACCGTTTCGATGTAATGTGTGCGGATACGATGTAACAACAAAATCTCAATTGGACAGACATTTAAAGACAATTTCGCATATGAATAAGTTAAATGAGTCATTAGCTTTAGAAGGACAGCATGCTGTTTAA
- Protein Sequence
- MTTYCRLCAESKTDDELSTTISDSKLNIKEKLVVCCQWNNYLINSHLPEGVCISCCEKLEKCWLFNETVAFAQAKLQEIFHDTDLVAVKCELNTEDDETCLCDPSENIFVEPITLPEPTIDDEKRLIGSTIDSVDESKSRQFHECDICQKSFTTAYNLTVHRRIHTNERPYCCLKCGKNFKSSSNLNQHLRQVHGKEKPHGDDESKDTTIEQNSEPNVESNLEEKTVYEQQSLNSSEFQYACHECGRRFRLKCTLTAHRTIHSNERPFECWMCHRSFKRRKLLRAHMRIHTQYPTIECNICGKRFRRNIQRDNHIKERHGAPVPKREKKPPPSPKAPVRKFTCELCGMSFTQRGGLFTHMTVHSDHRPHKCDMCGLGFKRKRTMQDHRKTHTHELEYKCNQCEKAFRKKISLRRHLEYHTGSIVKPFICDFCGKAFRLNANLVEHRRIHTNEKPYFCEHCASNFRTMSSFYSHLKKEHGISVLARKLEEQARATAMSFKTNQILQAHCKKQSEYKCDICSQLFCKEKALKRHRRQGCEGHIENVDILEAKPAFVDCSSELNVTLEQEPEIPIGLDAVSVQDVVDVNKTNYSKCDKEVERPNPASASLEFETLPLRVEINVNEKPDSMKRYKKYVSFEKDHSNENNDTDYHCYLCNRRFKKLPLLRCHMVVHTLPRKYKCQYCNSRFRTERHFTSHQKNHVDYYCDICNKKFPSAFALKVHKRMHVGASVKMYGCEECDHFFVDVSTFYNHMRRRHAAKPYVCEQCGKDFLERSSLKAHSVVHLDIRPFQCEVCPKAFKNKYNLKTHQETHTGEKSVQCTQCGKTYSRKSVLLKHMEEHTGVYTKVFPCDFCDRIFRSLYNMQNHRRTHTGEKPFRCNVCGYDVTTKSQLDRHLKTISHMNKLNESLALEGQHAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -