Aaph002147.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:25846143-25847601[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-09 5.3e-06 26.2 0.0 4 44 254 293 251 294 0.92 2 4 1.4e-08 2.2e-05 24.2 0.0 4 39 303 338 301 344 0.89 3 4 0.0012 2 8.3 0.0 23 38 370 385 360 390 0.81 4 4 4.2e-11 6.9e-08 32.2 0.1 5 37 412 443 410 451 0.89
Sequence Information
- Coding Sequence
- ATGGATTCACAAGCAATACTGCATACAATCAAGTGGAAAGACCACAAAAAGCAAATTATTGAagagcaaaaatatttgtttgacaaCAACTTGGAATGCGATTGTGTTTTGATATCGGCACAAGGGAAACGTATTCACGCGCATCAGGTTGTTCTGTCGTCTTCAAGTGAATTTTTCCGAAAAATGCTGAGTGAACTACCACCTTTGGTGGAATTACCATCAATACACGTGCCAGATGCAGATACTTGTGTTTTGGAAGCTATTTTAAAGTTTGTCTACACGGGCAAAACCACTATTGCTTCAGGCTACCTAACAACTCTGCTTGAATTCTGCAATTTCCTCGATATCAAAGGATGTGTTGCTAACGGTTTCACATTGAATGGTTCTAGTATGAAAGTTGGAATCGACACCATTCATACAGGAACCAATAGTTTGGAAAAGTCATACAGCTCAAGCGAAAGTTGGTCAAGTGAGGAATATCTGATGGTTACACCGGCGGAATGTGTTAACAGTGAAGATGATGGTACTGAAAGTAATGATCCAGACTATTTAGAAGAGTATCTTGATGATGATGGATTGTTTGATATAAAAGAAGAACATGTTCTAACCGAATATGAATACGATGAATGTAGAAATGATACAGagtttattgcatttgaagtAGAAAATCAGTCCGAAATTGTGTCGTCACAATCCAGTATTGATGCAAAACCAGCCACAAAACGTCAATATCGCCAAAGCACACGAAGTACGAGTTCACAAATTGACAGAGCATTGAATGAAGTTAACAATGGAAAAACGATTCACCGACTGTCTGTGGAATATAATTTACCACGTTCAACATTATATCATCGTTTCcgcaacaatgaaaatttaaagcAAAACTATAGACTCGAACGCAAATCCGCATTGGACAGTGCTGTTCATGCTGTACTACACGAGCGACTGAGTTTGAAAACTGCCGCCGATCGATATAAGATTCCGAAGACCGCAATTTGGCGTGAGGTACGAAAATGCGAACAATACCAACCTTCAAACAAAGAAGTAACAGCTGAAAGGCAAAATGCACAACTCGAAATTTTATCCGGAAAGAGCCTGACCAGTATTAGTGCTAAATACGGCATACCACTGACAACACTTCAccgtgacaaaaaaaaactctcggTTGAAGGTAAACTACCGGAATCGTTTCGTGTAAGAGATCGAACTGAAAACTCGGAGTATGGTCAGCGTCTCGAAATGGCATTGAAGAAATGCCGTGGTGGAATGTCGCAATATCAAGCTGCAAAACTGTATAATATACCAAAAGCCACCATGTGGCGTTATGCAAAcgcattgaataaatcaagTCGAAATAgaaaactcaaacaaaatgagaatacgtaa
- Protein Sequence
- MDSQAILHTIKWKDHKKQIIEEQKYLFDNNLECDCVLISAQGKRIHAHQVVLSSSSEFFRKMLSELPPLVELPSIHVPDADTCVLEAILKFVYTGKTTIASGYLTTLLEFCNFLDIKGCVANGFTLNGSSMKVGIDTIHTGTNSLEKSYSSSESWSSEEYLMVTPAECVNSEDDGTESNDPDYLEEYLDDDGLFDIKEEHVLTEYEYDECRNDTEFIAFEVENQSEIVSSQSSIDAKPATKRQYRQSTRSTSSQIDRALNEVNNGKTIHRLSVEYNLPRSTLYHRFRNNENLKQNYRLERKSALDSAVHAVLHERLSLKTAADRYKIPKTAIWREVRKCEQYQPSNKEVTAERQNAQLEILSGKSLTSISAKYGIPLTTLHRDKKKLSVEGKLPESFRVRDRTENSEYGQRLEMALKKCRGGMSQYQAAKLYNIPKATMWRYANALNKSSRNRKLKQNENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133505;
- 90% Identity
- iTF_00133505;
- 80% Identity
- iTF_00133505;