Agif003175.1
Basic Information
- Insect
- Aphidius gifuensis
- Gene Symbol
- -
- Assembly
- GCA_014905175.1
- Location
- CM026524.1:12429570-12433716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0046 0.4 10.6 4.9 1 23 254 277 254 277 0.94 2 11 7.6e-05 0.0067 16.2 0.6 3 23 339 360 337 360 0.94 3 11 2.9e-05 0.0026 17.5 3.6 1 23 386 409 386 409 0.97 4 11 0.00075 0.066 13.1 0.4 1 23 497 520 497 520 0.97 5 11 0.0045 0.4 10.6 2.1 1 23 562 584 562 584 0.97 6 11 0.00052 0.046 13.6 0.3 3 20 716 733 715 733 0.95 7 11 1.9e-05 0.0017 18.1 2.6 2 23 757 779 756 779 0.94 8 11 7.5 6.6e+02 0.5 1.0 3 16 861 875 860 877 0.83 9 11 1.9 1.7e+02 2.4 6.5 1 23 981 1003 981 1003 0.96 10 11 0.00015 0.013 15.3 0.1 1 20 1044 1063 1044 1065 0.93 11 11 4.5 4e+02 1.2 0.1 2 23 1198 1219 1197 1219 0.90
Sequence Information
- Coding Sequence
- atggaaattgATAGTAAATTAGGATCATCAATTCTTTCGACAGATAatgatgtttttgaaaaaatgagCGATTTTACAGAGTTTAGAATACTTACTGTACAATCTGATCATAACTATTACATGAATGGCATTGGAGACAACAATAATCAGGACTCATTATCAGTTTCTTGTATTGAAGAAGTGACTGAGAAGCCACAGTTAAAAACCGTTGATCATATTACTGTCGATGAAAAGGTTTTTGTAGAATCACAACATCAACAACGGGAATTAAAAGATGTTGacggtaaattaataaatatggtAAAAGACAATCATGAGGTAGAGAGagtagataaattattacaacaagttgatgatgaaaatcaaCATCAGCAAAAAAACCAATTGCAGAAAGAGCCACACGTTGaacattatcattatctaACTAAACAATATCAAAGTTATTATGAtgctaataaaatatatcaacctCAAACTttggaagaaaaatataacttaAAATCATGTTCAGTTACGATAACAAGATGTGATAAAATATGGGAAACtctgaaattaataaaactattaCAAGATAATCAAGAGTTATCTTTAATCGCAAAGTCTAAAAAAGACGATATTTGCGAAGATGCTCTActagaaaaaacaacaaataatcataAGTCTTTAATAATGCCATACATTCAATATCAACCAATAATTGGAAATGGTAACACAGCATTaccaaattttcaatttttagtcAAAAGTACAAGGCCATTGTATCATTGCTATACATGTGGTCGACAATACAGTCATCGTAGCACATTACGGGATCATTCTGAACgtatacataatataataataccatCAGTACGTCCACCAAGTTCAACGACTGTCAAGAAAAATGATActaatataaacaatgatgAGAGTGATATTGATGAACAACCAGAAACATcgaatgaatttattgatgattcaaGTGATATTACTGAAagctcaaaaataaatagctatAAAGATGGTAGAATAAACTGTCCCTATTGTGAAAAAACTTAttctgataaatataatttaaattttcatcttgaAACAAATCATGGTATGCTTGGTTTAATAAAACATCGTAATACATCAATGAGATGGAGAACAGTTAAGCGATCCACAATGAATGTACATAGATGTAATACATGTGGCAAAGATTTTTACCGTGATGATAAACTAAAGAATCATATGCAAAAAGAGCATGGCCTTCcattaatgaatatttgtaatcaaacaaataaaaaaattcacccTATTGAACCAACAAGACAAGAATCCCATGATAGTGAAGAAGAGCACGTTAGAAGAGAAGAAAGTGAGGATGAAGATGAAGGCggaaatgacaataaaaacgGCGGGGATGGTGAAGACGAAGaagaaaacattaaaaatgaacTGATACAGACAGTCACTAAAAcgattgatgatgataataattatatagacgataaaaaaaaagaattatattcaTGTCcagtttgtaaaaaattatatgttgataaaataagttggaaaattcatttaaagaaattaCATGGTATATTATTACCACCAGGACGGCATACAAGACttgaacttgaaaaatatttaaaaaatttaaaattaaaaaaaaaattaatgaatccaacaaatgataaaaaagttgtTAATCGAGGCAATTTTGAATGTCATATTTGTGGTGCTAAGTTCTTTCGTACAATATATTATGATATGCATATGGAAAAACATGTAGATGGCATAATATCAGAAACTGGTACGctggttattaataaaaaatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcattatcattatcattatcatcatcattatcatcatcatcattatcatcattatcatcatcgtcatcaccaccaccatcatcaacattatcatcatcatcgtcatcattatcaataataccAAAACAACGTGAGAAAAAGTTGTCTGATTGTGAATATTGTGGTAAAGCATTTCGTTTATTAAGAAATTTAACATCACATCGTCCgcgttgtaaattaataacagaATACCGTGAATCAAATGTAGAAAATAATGGTGACAAAGAAAGATTAGTATGTAATATTTGTGGAAAAACATGTTCGAACGATTCACATTTAGTACGGCATTTGAAAGATTCTCACAGTATTGATTTTccaaaaaccaaaaaattaaaaaaatcccatgataatgataaattatcatgtagTTTACGTACAAAAGAACGTCTCAATTATGATGAAAACGTACAATCACATTTATCTGGTATTGTCAAAAATCCAATGCATCAAGATGAACAATCATTAATACGTCAAAgtgaattcaaaaaaataccaGTAACGGATAATGATACAAATCAGTTGAACAGTTCAATACAGTGTATATTATGCAATcgtcattgtaaaaaaatatataaacacttTACTGAATATCATAAAATACGACATCCAGATGCAATAATTGCCCAGTGTAAACCATCAAgttcaattgatattgatattgatattaaagaTAAGGGATTGAAAAGATCACCAAGTTTACCAGAACTTGAAAAGtatgaaacaataaaatctGAGCCACCGACaagtgataatgatgatagtgaTAACATAATTCATGATGTTAGAAGCAAAAGAAATATCACCAAAGGTAGACGACGCCATACACAACCAATTGAAATAACACAACATTATCCAACACCTGGTCCAGATAGATTATTTGAGTTGATAAATAgtgataaacaatattataaatgcaaATATTGTTCAtacaaaacatttaattataaacaagcTTGTGGACATCAATCAACACACCCGCAAGAATATTATGGATCAAAAGGACGTAGAACATCGTtaccagaaaataaaaatcatgtacTAGGATCATTGTCACGTAAAACACGTGCTAGTTTACGTATgcgtgaagaaataaattttcaatgttcAATATGTGATAGAGTATTTCGTAATGCTGATGTATTAGCATCACATAAAATATCATGTATACCCCGAATAAATGTTGATTCACCAACAACTATTGATATTACAAATGACATACACGAAAGCAGTGATAGAGATTCTGGTATTGGTATTagtataacaattaaaaagaaaaatgattcgTATGAAATTGTTAGTAGAGATAGTAGTGGGGAAAGAAAAAcggatgatattattaatgatttaccAAACAATGCCATTATGACATCCAATACATCAATCAACTTAAATACTTCACAactttcaattgataatattaaaattgaatatgatTCTGATAACCCAAATATGAgtaatattcattataaacGTGGTAGtactaaaaaatatcaagttagTTCGTTGGTTTGGTTGTGCACAAATGTCTTACGTATGTCTAAAAAAATTGGCCTATTACAATGTCCAGTATGTATGATCAAATGGCCAAGTAAAAAATCACTCGTCTTACATGGTCGTATACACAAAGCTAATAGAATGTCTCTGtaa
- Protein Sequence
- MEIDSKLGSSILSTDNDVFEKMSDFTEFRILTVQSDHNYYMNGIGDNNNQDSLSVSCIEEVTEKPQLKTVDHITVDEKVFVESQHQQRELKDVDGKLINMVKDNHEVERVDKLLQQVDDENQHQQKNQLQKEPHVEHYHYLTKQYQSYYDANKIYQPQTLEEKYNLKSCSVTITRCDKIWETLKLIKLLQDNQELSLIAKSKKDDICEDALLEKTTNNHKSLIMPYIQYQPIIGNGNTALPNFQFLVKSTRPLYHCYTCGRQYSHRSTLRDHSERIHNIIIPSVRPPSSTTVKKNDTNINNDESDIDEQPETSNEFIDDSSDITESSKINSYKDGRINCPYCEKTYSDKYNLNFHLETNHGMLGLIKHRNTSMRWRTVKRSTMNVHRCNTCGKDFYRDDKLKNHMQKEHGLPLMNICNQTNKKIHPIEPTRQESHDSEEEHVRREESEDEDEGGNDNKNGGDGEDEEENIKNELIQTVTKTIDDDNNYIDDKKKELYSCPVCKKLYVDKISWKIHLKKLHGILLPPGRHTRLELEKYLKNLKLKKKLMNPTNDKKVVNRGNFECHICGAKFFRTIYYDMHMEKHVDGIISETGTLVINKKSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSLSLSLSSSLSSSSLSSLSSSSSPPPSSTLSSSSSSLSIIPKQREKKLSDCEYCGKAFRLLRNLTSHRPRCKLITEYRESNVENNGDKERLVCNICGKTCSNDSHLVRHLKDSHSIDFPKTKKLKKSHDNDKLSCSLRTKERLNYDENVQSHLSGIVKNPMHQDEQSLIRQSEFKKIPVTDNDTNQLNSSIQCILCNRHCKKIYKHFTEYHKIRHPDAIIAQCKPSSSIDIDIDIKDKGLKRSPSLPELEKYETIKSEPPTSDNDDSDNIIHDVRSKRNITKGRRRHTQPIEITQHYPTPGPDRLFELINSDKQYYKCKYCSYKTFNYKQACGHQSTHPQEYYGSKGRRTSLPENKNHVLGSLSRKTRASLRMREEINFQCSICDRVFRNADVLASHKISCIPRINVDSPTTIDITNDIHESSDRDSGIGISITIKKKNDSYEIVSRDSSGERKTDDIINDLPNNAIMTSNTSINLNTSQLSIDNIKIEYDSDNPNMSNIHYKRGSTKKYQVSSLVWLCTNVLRMSKKIGLLQCPVCMIKWPSKKSLVLHGRIHKANRMSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00132212;
- 90% Identity
- -
- 80% Identity
- -