Agif003463.1
Basic Information
- Insect
- Aphidius gifuensis
- Gene Symbol
- -
- Assembly
- GCA_014905175.1
- Location
- CM026524.1:2109470-2133868[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 0.18 11.7 0.6 2 23 274 295 274 295 0.95 2 11 0.068 6 6.9 4.0 1 23 524 547 524 547 0.96 3 11 0.012 1.1 9.3 1.0 1 23 555 577 555 577 0.97 4 11 0.015 1.3 9.0 4.2 1 23 585 608 585 608 0.96 5 11 0.044 3.9 7.5 1.0 1 23 620 645 620 645 0.95 6 11 2e-05 0.0017 18.1 0.6 1 23 651 674 651 674 0.95 7 11 6.9e-05 0.006 16.4 2.8 3 23 681 702 679 702 0.94 8 11 0.0012 0.11 12.4 0.7 1 23 707 730 707 730 0.96 9 11 6.4e-06 0.00056 19.6 0.4 2 23 737 758 737 758 0.98 10 11 1.2e-05 0.0011 18.7 0.8 1 23 764 786 764 786 0.97 11 11 0.00064 0.056 13.3 0.3 1 23 792 820 792 820 0.87
Sequence Information
- Coding Sequence
- ATGTCATCAATCGATTATTTAGATTTGTGCCGATTGTGCCTTGTTAAAGAAAGCGCTTTTGTGCCAATATTTGATGGCGAAGGTGATGGCAGACAAATATTTCTTAAAATCGCTGCCTGCCTGCCGGTCAAGGTGACCAGAGATGAtaaattgccaaaaaaaatatgcaacgAGTGTgtacaaaaaattgaattattttatcaattttgtaACACAACGACAAATGCTGAAAAACAATTGTTAGAATGGATTGGTGGAGTTGATTTGAATGACAAACAAACATATGTATCTGCAGTAATTAATCAgGATCAATCATCTAACAACAGACTTGATGGAAATGTAATGCAACAAACAAATGAACAACACCAAAATAACATTGATATGAACATGATGGAATCAATAGGACTAGAAATGCCAATGATGATTCAACAAAATCAAACtcaaatgacaattaattacACAAACAACACAAATGCTCAGTCAATGCAATCAAACACAGCTgctcaacaacaaaataactCTAAAAATATGGATGATTCTGATGATGATCAttgtggtggtgatgatgacaTGGGACAAAATGaagaACTTTCTGTCAAAGAAGAAATACACGATTCAAACAGAACCATTGAGCCAGCATTTGTTAATGTCTCAATTCCTTGTGAAGAAGCTGGACCATCTGGTCTTCAACAAAAATCTGGTGATATTCCAGATGGACAATTTCTTGCTGGACAATCAACTGATGGAGATCCCAAGTCAGGTCTATCTGAAATGCCTGGAATCGAAGGATTCATTGATATGAAGCCAATTTTGCCACGTTCATGTGATAAATGtgacatattattttcatcaaaaaaagatttaattgaTCACAAAGTACGTCACAAGATGGATGATGAACAatcaaatacaacaaaattttacaatacatATGTAATTGCAACTGTTCCATCATCtccaaataatattcaaattttattgccAAAATCAGAtgtattaaacaaattaattaaaatcgaAAATCTTAAAACAGAATCTATAACAGATAATGAACAAGAAAATGAATCAATTAAAGTATTAGAAGATGAGCAAGAAGTACTAGttgaagaagaaattaatgaagaagtagtagaagaagaaaaagaagacgAAGGAGTAATATTAGCACAATTAAGTTCTGACGAATTTCCTTATGATGAAGTAAATAAAGAGTCTAATGAAGAAACTATGAATGAAGATGATTCATTTGAAGATGTATATGATGATAacataaatttagaaattgcaaataaagaaattgtatatgatgaagaagaagatgtaTATGATGATAacataaatatagaaattgcaaataaagaaattggaccagatgaaaatataattatatatcaaattgaaGATGATATAGATTTTAAAGatgaaacaattgataatagtaataatattgaaagtgATGAACTATTATCACTAGAATTTGATGAAGATTTACAagctgataatgatgatacaacatcatcaattgaacaatcaaaaaataaagataaaaaaacaaataaaaaaacaatatatcaaTGTGATACATGTGATTttgaatgtgaaaaaaaaacaacactttATAGTCATGTTAGTCGTAAACATCGTCATgctaatgataatatttattcatgtacTGATTGTGATTttacatcattaaaaaaagcatCATTAGcatcacatttaaaaaaacatacaaaagatgaaatacaaatatttgcaTGTAGTGTTTGTAATTAtcgtacaaataaaaaaacaacattataTTCACATATACGTCATAAACATGAtccaaaacaattattaaaattacaacaattatatGCTTGTCCAGAGGATAATTGTAATTATCGTAATCGTAGTAAACATGAATTAAAAGTACATATTGCACGTAAACATaatgatgaatataattttccatGTGATcaatgtgataaaaaatataaagttaaaGGTGATTTAACAAATCATGTACGTTTTGATCATATTGAAAAACCAGTAATATGTGAAGTTTGTGGTAAAACATGTCGTAATAGTCATTCATTATTTGTACATCAAAAATTTGCACATTTTAAAGCTAGTTTTGAATGTAATATATGTAAAAGACGTATGGTTACACaagaaaatttagatgaaCATATGTTTAGACAACATGAACATCGTGAACATGCACAATGTCCACAatgttcaaaaatatttaataaagcaagtgtattaaaaatacatatgagAATACATTCTGGTGAAAGACCATATGCCTGCaaattatgtgaaaaaaaatttgtaagaaGAACAGCATTACGTCAACATGCACTTACACATACTGATTTTAAACCATATGTATgtgatgttgttgttaatgGTGTTGTTTGTGGTAAATCATTTACACAAAAACCTGGTTTAACATGCCACAGAAAAACTCATCCAGGAGATCATCCAGCAGCACCACCAGTTTTTATCAGTCAATTTTTAACTGATGTTTTGgatgattaa
- Protein Sequence
- MSSIDYLDLCRLCLVKESAFVPIFDGEGDGRQIFLKIAACLPVKVTRDDKLPKKICNECVQKIELFYQFCNTTTNAEKQLLEWIGGVDLNDKQTYVSAVINQDQSSNNRLDGNVMQQTNEQHQNNIDMNMMESIGLEMPMMIQQNQTQMTINYTNNTNAQSMQSNTAAQQQNNSKNMDDSDDDHCGGDDDMGQNEELSVKEEIHDSNRTIEPAFVNVSIPCEEAGPSGLQQKSGDIPDGQFLAGQSTDGDPKSGLSEMPGIEGFIDMKPILPRSCDKCDILFSSKKDLIDHKVRHKMDDEQSNTTKFYNTYVIATVPSSPNNIQILLPKSDVLNKLIKIENLKTESITDNEQENESIKVLEDEQEVLVEEEINEEVVEEEKEDEGVILAQLSSDEFPYDEVNKESNEETMNEDDSFEDVYDDNINLEIANKEIVYDEEEDVYDDNINIEIANKEIGPDENIIIYQIEDDIDFKDETIDNSNNIESDELLSLEFDEDLQADNDDTTSSIEQSKNKDKKTNKKTIYQCDTCDFECEKKTTLYSHVSRKHRHANDNIYSCTDCDFTSLKKASLASHLKKHTKDEIQIFACSVCNYRTNKKTTLYSHIRHKHDPKQLLKLQQLYACPEDNCNYRNRSKHELKVHIARKHNDEYNFPCDQCDKKYKVKGDLTNHVRFDHIEKPVICEVCGKTCRNSHSLFVHQKFAHFKASFECNICKRRMVTQENLDEHMFRQHEHREHAQCPQCSKIFNKASVLKIHMRIHSGERPYACKLCEKKFVRRTALRQHALTHTDFKPYVCDVVVNGVVCGKSFTQKPGLTCHRKTHPGDHPAAPPVFISQFLTDVLDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -