Agif001539.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidius gifuensis
Gene Symbol
-
Assembly
GCA_014905175.1
Location
CM026525.1:2654077-2657561[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.5 7.5e+02 0.3 0.0 3 17 68 82 67 83 0.84
2 13 0.00091 0.081 12.8 3.1 1 23 398 420 398 420 0.98
3 13 0.0021 0.19 11.7 2.0 1 23 424 446 424 446 0.99
4 13 7.3e-05 0.0064 16.3 4.7 1 23 451 473 451 473 0.96
5 13 0.0013 0.11 12.4 3.1 1 23 537 559 537 559 0.95
6 13 0.0013 0.12 12.3 0.5 1 23 564 586 564 586 0.97
7 13 0.00027 0.024 14.5 2.4 1 23 688 710 688 710 0.98
8 13 0.00017 0.015 15.1 0.6 2 23 718 739 717 739 0.97
9 13 1.3e-06 0.00011 21.8 2.1 1 23 750 772 750 772 0.96
10 13 0.00016 0.014 15.2 2.6 1 23 778 800 778 800 0.97
11 13 3.1e-05 0.0027 17.4 0.8 1 23 806 828 806 828 0.98
12 13 1.9e-06 0.00017 21.3 2.5 1 23 834 856 834 856 0.96
13 13 4.9e-05 0.0044 16.8 0.3 1 22 862 883 862 883 0.96

Sequence Information

Coding Sequence
atgaataccAATTTTTATGGTTCAACAATGGAAATGAACAGGGTATGTCGTGTATGTCTAGCAGAAACTGATGGTACAGCATCAATATATACTCAACCAATAACAGACACAAATATACAACAAGGTTTAACATTTGcccagaaaataaaaatatgtggtGAAGttgaagttaataataatgataattttccaTCATCAATATGTGAAATATGTAGTTACAGAACAAGTGTTGCATATGATTTTCGTATACAATGTCAAAATTCAGATCAACGTTTACgtttatattatgaaaaacCATCAcgtttaaattcaattgaatctGCAACCCAAACTGATCCAAAAATACacattaaatttcataaaaataatgatgatcaatcaaattattatgttaaacaagaattacaaaatataaataatccaacaatgaatacaattgtttatcaaaatgaCGTTGaacatcagcatcatcatcatcaacaacagcagcaacatcatcatcaacaacaacaacaccatcatcaacaacaaccagAACAACAAGttcttcatcatcagcatcaacaacatcatcaacaagaaacaataattgataataatataattcaaacagatgataaattatatttatgtcaAATCGGTTatgaaaatacaacaaaagatcttaataaaaattctgtaTTAATTGAAAcacaaaatattgatgatacaacaaattgcatacaaaataatacacaaataTTAATAGCAACTGATGGTAGTTGTGAACAAAGAATtcatgatgttgttgatgaatcattacttgaaacaagtaataataaaacaacaaattcagatgaatattttaatggaCATATTCTAGTAACATctgatggtgttgttgttgcaaAACCAAGTGaacaaacaaatatacaacaaaatgataatttaaatatagtaTGTTcatcagataataatttaaatacaataattgataataataatgataatataaatgatgaaaattcaattgatacaattgatgaaaaaataatttcaaatcatgaagaagaagatgataatgatggtgatgttggtaatgatgttgatgatataCGTCAACCAACAATGAGAGCAGCAAAATCATCTGGTAAATCatacaatgatgataatgatgattatcaatgtttaaatgaacaagaaaaacaaacatataattgtaatatatgtcaaaaaaaatatacatcaattaaaagattaaaaaatcattcacaaacacatgaaaaaaaatataaatgtaaaatatgtgcacgtttattttataaatttgataattatgataaacatattaaaatacatgaaaCAAAACCACATGCATGCCAACAATGTCATACATCATTCACAAAACCACAAAGCCTTGAGCGTCATTTAAAAAGtcataaatcatcaaaatttcaaccatcaatatttaaaaaaattaataataataataatagcaataatattaataaaaataatgatgatgataataataaaaatagtgataatgatagtggtgatggtgatgatgatgataatgataatttacatatggatattgatgataattttaataaaccacCTGGTTGTTTTAAGTGTACAGTATGTGGACAATTATGTTCAacattaaaaagtttaaaaagacATTCATTATTACatggtgataaaaaatattcatgtactGTTTGTGAACAATGGTTTTATCGTCCagatacattaaaaaaacatgctGAAAAACATGGTCATGGTTTGttggataatttaattgataaaaataaattatatgattcatctgatgatgattatccatcaacgacaacaacaacaacaccaacaacagctacattaaaaaatgatattaatacaagtggtgatgatgatgatgatgaggaagatgatgacgatggtggtggaggtggtgatAATGACGATGACAACcatcatgatgatgaagacgaagatgataatgttaataatgttaatggtgattgtggtggtggtggcgacgatgatgatgctgctgatgatgatgataataataaatataaatgtcaacattgtgataaaataatgaaatctAAAAAAGGTTTGATACGCCATGTATCAATGCATAAACCAAAAGCTGAACCAGTAACATGTGGTATATGTAATAAAGTATGTGCAAGTCAAGCAAGATTAGCATTACATCAAAAAACTCATAATAAACCAAAAGATAAAATACCACGTGAATATTTATGTCATGTTTGTTCAAAAGTATATCCAAGtaattcatcattaacatATCATATGAGAACACATACTGGTATTAAACCACATGTATGTAAAATATGTAATAGTAgatttacaacaacaacaagtctTGCTAATCATACACGTATACATACTGGTGATAAACCATTTGTATGTCATGTTTGTAGTGCTGCATTTGCTGTTAGTTCAGCATTTCGTCGTCATATGACAAGACATACTGGTGAagctaattatttatgtaaagaATGTGGTAAAAGATTTAAAAGATTAAGTACACTTAAAGAACATACATATACACATTCGGGAGAAAAACCATATGTCTGTAAAAATTGTGGTGTTGCATACAGTCATTCTGGTAGTTTATTTGCTCATCAAAAAAGatgtaaaatacaatataatgatattaataatgaacaacataataatcataatattattattaatcaaaatcaAATTCATGTTGCACATCATATTCATGTTAATAATGTACCATCTGCTGTCAGATCATTGGGTGTTATTGGTCCCATGTTTTGA
Protein Sequence
MNTNFYGSTMEMNRVCRVCLAETDGTASIYTQPITDTNIQQGLTFAQKIKICGEVEVNNNDNFPSSICEICSYRTSVAYDFRIQCQNSDQRLRLYYEKPSRLNSIESATQTDPKIHIKFHKNNDDQSNYYVKQELQNINNPTMNTIVYQNDVEHQHHHHQQQQQHHHQQQQHHHQQQPEQQVLHHQHQQHHQQETIIDNNIIQTDDKLYLCQIGYENTTKDLNKNSVLIETQNIDDTTNCIQNNTQILIATDGSCEQRIHDVVDESLLETSNNKTTNSDEYFNGHILVTSDGVVVAKPSEQTNIQQNDNLNIVCSSDNNLNTIIDNNNDNINDENSIDTIDEKIISNHEEEDDNDGDVGNDVDDIRQPTMRAAKSSGKSYNDDNDDYQCLNEQEKQTYNCNICQKKYTSIKRLKNHSQTHEKKYKCKICARLFYKFDNYDKHIKIHETKPHACQQCHTSFTKPQSLERHLKSHKSSKFQPSIFKKINNNNNSNNINKNNDDDNNKNSDNDSGDGDDDDNDNLHMDIDDNFNKPPGCFKCTVCGQLCSTLKSLKRHSLLHGDKKYSCTVCEQWFYRPDTLKKHAEKHGHGLLDNLIDKNKLYDSSDDDYPSTTTTTTPTTATLKNDINTSGDDDDDEEDDDDGGGGGDNDDDNHHDDEDEDDNVNNVNGDCGGGGDDDDAADDDDNNKYKCQHCDKIMKSKKGLIRHVSMHKPKAEPVTCGICNKVCASQARLALHQKTHNKPKDKIPREYLCHVCSKVYPSNSSLTYHMRTHTGIKPHVCKICNSRFTTTTSLANHTRIHTGDKPFVCHVCSAAFAVSSAFRRHMTRHTGEANYLCKECGKRFKRLSTLKEHTYTHSGEKPYVCKNCGVAYSHSGSLFAHQKRCKIQYNDINNEQHNNHNIIINQNQIHVAHHIHVNNVPSAVRSLGVIGPMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00131470;
90% Identity
-
80% Identity
-