Agif001255.1
Basic Information
- Insect
- Aphidius gifuensis
- Gene Symbol
- -
- Assembly
- GCA_014905175.1
- Location
- CM026525.1:4859343-4860228[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.72 4.1e+03 -3.0 0.1 16 21 63 68 60 68 0.77 2 2 1.5e-08 8.8e-05 21.5 0.0 4 40 102 137 100 142 0.84
Sequence Information
- Coding Sequence
- ATGGATTTGAAAATGACAGATACAAAAACATCAACTAATAATTTACCTGaaacttcatcatcatcaaacacCTCAGATTCTGTTAATATAGAGCATGGTGAATCAATTGAACATCttggaaaagaaaataattcatgtaaAATTACAATGAATGAGTCACCAGGTGTGGTTAAAATGGAGTCAAATGAAATGTCTGTACAACAGGACAAGCCTAATTCAATCAGTACCATGCCAACAAATGATTCAAGCAATTCAACACCCTTAAATGAAGgATATCAAAGACGGCGAAGACGTCCAGAGTCTGACTTGATAGTGGCAGCTGAGATGGTTTTAAGTGGCATGTCGCTTAAGGATGCTTCTGAAAAATTCGATATGCCAATAAGCACAATACGTTTTTACATGGATCGAAAAGGATATCTTCAACGTTTATGGAACAGAAATAAAGACAATAATGATACTGATACTGATACTAATACCGATACCGATGAAGACGAGATACCAGAATGTACAAATTAG
- Protein Sequence
- MDLKMTDTKTSTNNLPETSSSSNTSDSVNIEHGESIEHLGKENNSCKITMNESPGVVKMESNEMSVQQDKPNSISTMPTNDSSNSTPLNEGYQRRRRRPESDLIVAAEMVLSGMSLKDASEKFDMPISTIRFYMDRKGYLQRLWNRNKDNNDTDTDTNTDTDEDEIPECTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00131884;
- 90% Identity
- -
- 80% Identity
- -