Aerv016335.1
Basic Information
- Insect
- Aphidius ervi
- Gene Symbol
- -
- Assembly
- GCA_015776835.1
- Location
- MKYW01000131.1:199195-203764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.8 78 3.9 6.4 2 23 230 252 229 252 0.97 2 16 0.014 1.4 9.4 2.0 1 23 341 363 341 363 0.97 3 16 0.052 5 7.7 0.6 1 23 412 434 412 434 0.98 4 16 0.11 11 6.6 0.9 1 20 496 515 496 517 0.91 5 16 3.8 3.8e+02 1.8 4.8 1 23 529 552 529 552 0.91 6 16 0.062 6.1 7.4 1.7 3 23 559 579 557 579 0.95 7 16 3.9e-05 0.0038 17.5 0.5 3 23 596 616 594 616 0.96 8 16 9.9e-06 0.00097 19.4 0.3 2 23 665 687 664 687 0.96 9 16 0.00044 0.043 14.2 1.2 1 23 693 716 693 716 0.95 10 16 0.044 4.3 7.9 0.7 2 23 728 750 727 750 0.86 11 16 3.6e-05 0.0035 17.6 0.9 3 23 760 780 758 780 0.92 12 16 0.0032 0.31 11.5 0.1 2 23 837 858 836 858 0.96 13 16 0.00014 0.014 15.7 0.8 2 23 875 896 874 896 0.96 14 16 0.15 15 6.2 0.7 1 23 966 990 966 990 0.95 15 16 0.13 13 6.4 0.5 1 23 995 1018 995 1018 0.86 16 16 0.25 25 5.5 0.0 2 23 1051 1073 1051 1073 0.93
Sequence Information
- Coding Sequence
- ATGGATGATATTGTCGAGTTGGACAATATTAAAAATGTTTGTAGATTATGTTTATCTACTGATGAGCCAAAAATTGATATTTTTGGTATCAAAGAATCATCACTACCATTTGATGAACTAATTCATCAGCATTTATTAATTGAGGTTGCATCTGATGACAAATTGTCAACGCTAATTTGTGAAGGATGTATTGATAAAGTCAAAGAATGGCATATTTACAAGGAATCTTGTAAAAAATCACAGGAAAAATTACAACAATGGCTTGATCCCAGTGTAGAAGATGATACTAATGTAAAAAGTCCAGCTGAATTATCACAAGCAGATGTGTCAGTTGAAGATATAATTCCAGAAGAAATATCATCAATTGAAAATGATAGTACATTAAATACAACAATGGATGATGTATCAATGGAATCAATTGAAGAAGATTCACCAGTAAAAAATGAGGAATTAAAAACACAAAAAAATACAAAAGTTGATAAAATTGAAATAAAACGTGAACCACATGATGATTATGATAATATTGATGTTGAATCAGTTGCTGATAGTGAATTATTAGTAAATCCAATGGCAGGTGTAACAAATAAAATTATTGAGCCTGATTCAACACAAAAATTTACAAAATCTAAAAAAAAAATACGTCGTGGTTTACGTACACATTTTCGTGGTGTTAGAGCATTCAAAAAAAAATGTTCACATTGTCAAGTTATATTACATTCCAAATTTTCATATAAAAATCATATGCAAAGATATCATAATGATGATAACAATTTAATTGAAAATAGTGATAATAACACAAAAGAAATTGAAACTGGTAATTCAACTGAAGATGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTAATGAAGATGATGAAGTAATGGATGATGAAGAATCAATTGAAGATGTTGAAGATGAATTAATATCAATGGAAAAAAATGCACCATTAACACAAGTTCAAGAAAATATAATAAGTCAATTGAAAACATTTTCATGTTATTCATGTCAACAAGTATTTAATGATCGTCGTAGTACATTAAATCATATACGACAACATATGCCTGATTTACGTCCATATACATGTATTGCATGTTTAACTGAATTTCCAGATCGTTCAATATATAAATTACATTGTGGTGCATCATTTGAATGTGCTATGAAAATAGCACTTGTAACTCCAAAACATGGTACTGAAAAATATTTTACATGTAATATGTGTTTACGTCCAATGCCAAATAGAAAAGATTTATTAACACATTTATCAAAACATTCTGATCGTCAATATGAACAATTAACAGCACCACAAAAAACACCAATTAAATTAAAACCAACAACAACAGCAAATATACAAACAACACCTATGAATAATAGCTCTAATAAAAAAACAAATAATAAATTAATAAATCCATCATTGCTATTAGGACCATATCAAAATGGTGCTCCATCTCATAATCATACATGTATTTATTGTGGTATGATTTATAAACATAAACCAAATATGTTAAAACATCGTGAATTATGTCAACGTTTACCACCACATGAAAGAAATTCATATCATTGTGCTCATTGTGGTTTAACATTTTTAATATTTAAAAAATTTCAATCACATACTAATACTGAACATCGTCGTAAAGAAATTATATGTTATTTATGTGGTTCAAAATATAAACATGCACATGAATTTTTAGCACATTATCAAGAACATCGTGATTCAAATAATGATAATAAAAATAATAAAATAATAAAATATGGTTGTCCATTATGTCCAAAAGAATTTAAAACACAAAATGAATTACAACAACATAAAACATCACATTTAAAATTAAAAAATACAGATAAACCATTGACAATTGATGATGATTTAAAATTAATTGGTAATTGTAGTATGCAACAAGAGCAACAACAACAAGATACACCAATATTTTCACCACCAAGTGGTGAACCTGGTTCAAGAAGTACTGAATGTCGTTCATGTGGTAAAATATTTGCAAATTATCCAAATTTAAGAAGACACGTTAGAACAGCACATATTATTAATGGAAGATTTTGTTGTCCAAATTGTACAAAAACATTTACCAGTGAAGATTTATGGATACAACATGGACAACGTGCACATCCACGTGACATTGAAGCATCAACAATATTAATAACATGTCAACAATGTAAAAAAGTATTTAATGATGCTGAACAACATTCACAACATTTAATTGAAGAACATGGCATTGATGAAGATGATCATTTAGCATGTGATATATGTGGTAAAAGATTTAGTAATGAAACATCATTAAAAATACATCGTGGACATCATTTTAGACGTGATTCACGTTTAAGTATTAGAAATATACCAAATCCAATGGAACAAGTACAAGTTGAAATTGTTGAGGGAACAAATGAATTAAATTTGAATTTACGTAAACATTTAGTAGATGTACATTGTACTGGAAATAAAATTGATGATTCATTTAATGATGAATTACAATGTAATTTATGTCCAAATGTATTTAATGATGAACAATCACTTGATGAACATATTAAATGGCATAAAGAAGATTCATTATTAAATGATGTTGTAAGAGCACCACCAGATATTATGTGTGATATTTGTGGTAAATATTATTCATCAATTAAATCATTAACAAAACATAAAAAATTACATAAAACAAATTCAGCAAATATAAAATTTACATCAGTTAAAAAACCACCAATAACAGCTGATGACTCTGAAATACGTCCAAAAAGACCAAAACTTGATTTTGATATTATTAGAAAAGCATATAATTTAGGTGAACCATCTGGTAGTAGTGTTGGTACACCAAATACATCTAAAAAAGCTGTAACATGTGTACATGGTAATGGTGAAAAACATTATTGTACAATTGATGATTGTAATGAAGAATTTGATACATCTGTTGCTAAACAATTACATGAAAAAAGTCATATGAGTATGTTATTTCAATGTAATTATTGTGATAAATATATGTTTAATCGTGGAGCAATTGATAGTCATTTATTGACTGATCATTCATCAAATGTTAATGATGATAATCTTAATGATGAAAAAAAACATTTTAAAAAAGTTGATTTAGGTGATTATGAAGTTAAAGGAGCTGATGGTCGTGTTTGTCCAGTTTGTCTTATTAAATATCCGAATATTAAAGCATTGAAAATTCATTATGTTAAAATTCATGAAGGAAATACGTAG
- Protein Sequence
- MDDIVELDNIKNVCRLCLSTDEPKIDIFGIKESSLPFDELIHQHLLIEVASDDKLSTLICEGCIDKVKEWHIYKESCKKSQEKLQQWLDPSVEDDTNVKSPAELSQADVSVEDIIPEEISSIENDSTLNTTMDDVSMESIEEDSPVKNEELKTQKNTKVDKIEIKREPHDDYDNIDVESVADSELLVNPMAGVTNKIIEPDSTQKFTKSKKKIRRGLRTHFRGVRAFKKKCSHCQVILHSKFSYKNHMQRYHNDDNNLIENSDNNTKEIETGNSTEDDXXXXXXXXXXXXXXXXXXXSNEDDEVMDDEESIEDVEDELISMEKNAPLTQVQENIISQLKTFSCYSCQQVFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVTPKHGTEKYFTCNMCLRPMPNRKDLLTHLSKHSDRQYEQLTAPQKTPIKLKPTTTANIQTTPMNNSSNKKTNNKLINPSLLLGPYQNGAPSHNHTCIYCGMIYKHKPNMLKHRELCQRLPPHERNSYHCAHCGLTFLIFKKFQSHTNTEHRRKEIICYLCGSKYKHAHEFLAHYQEHRDSNNDNKNNKIIKYGCPLCPKEFKTQNELQQHKTSHLKLKNTDKPLTIDDDLKLIGNCSMQQEQQQQDTPIFSPPSGEPGSRSTECRSCGKIFANYPNLRRHVRTAHIINGRFCCPNCTKTFTSEDLWIQHGQRAHPRDIEASTILITCQQCKKVFNDAEQHSQHLIEEHGIDEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRNIPNPMEQVQVEIVEGTNELNLNLRKHLVDVHCTGNKIDDSFNDELQCNLCPNVFNDEQSLDEHIKWHKEDSLLNDVVRAPPDIMCDICGKYYSSIKSLTKHKKLHKTNSANIKFTSVKKPPITADDSEIRPKRPKLDFDIIRKAYNLGEPSGSSVGTPNTSKKAVTCVHGNGEKHYCTIDDCNEEFDTSVAKQLHEKSHMSMLFQCNYCDKYMFNRGAIDSHLLTDHSSNVNDDNLNDEKKHFKKVDLGDYEVKGADGRVCPVCLIKYPNIKALKIHYVKIHEGNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -