Acol005442.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010001144.1:16906-20733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00018 0.015 15.6 2.8 1 23 135 158 135 158 0.95 2 13 2.8 2.3e+02 2.4 0.1 8 19 198 209 198 211 0.91 3 13 0.034 2.8 8.5 6.6 2 23 274 296 274 296 0.91 4 13 0.00025 0.021 15.2 0.8 2 23 355 377 354 377 0.93 5 13 6.8 5.7e+02 1.2 7.4 3 23 486 507 485 507 0.86 6 13 0.0016 0.13 12.7 0.6 2 23 627 649 626 649 0.95 7 13 0.00013 0.011 16.1 0.4 1 23 679 702 679 702 0.95 8 13 0.0071 0.6 10.6 3.6 2 23 764 786 763 786 0.96 9 13 0.096 8.1 7.0 4.2 3 23 801 822 799 822 0.92 10 13 0.00016 0.014 15.7 0.4 3 23 905 926 904 926 0.96 11 13 0.23 19 5.8 0.9 1 23 1018 1040 1018 1040 0.97 12 13 0.059 4.9 7.7 1.4 2 23 1056 1078 1055 1078 0.96 13 13 0.034 2.8 8.5 0.9 1 23 1157 1180 1157 1180 0.97
Sequence Information
- Coding Sequence
- atgacgTCTACAGTGGCCCGGGAGTCAATGTTGGCACCGCCACCAAGTGAATTGGATAGTGAAGGTTCAAGTTGTGGTGAAGATAGTAGAAAAAGATCACGAGATGATGGTAATTATCCAAAAAAACGTAGAAAGCAAACAACACCAGTGAGATTTCCAATAACATTTGAAACACAAAGTTcacaatttaatgataataatcaatacaatgaaaacaataatacaaatgataataatagggACGacgacaatgatgatgatggagatGATGtagatgatgctgatgatgatgataataacaacGATGATAATAtggataataatgatagtattaataataaagataatgaagaaaattatttacccttacaaacaacaaaagatgaaaatttaaatacagaaTATCGTTGTCAATATTGTGGTcatgattttgatgataataataatttatcacatcatttaataaatgaacatggtattaataatataacacaCTTATCAAGTCCAACATTACAAGATAATGTGcgtattaaaattgaaaatcagCAAGATGATAATGAAACACCTGTTAATTTATCTGGtataagtattaaaaatttttcaacatcatcatgGTTAACAAATCATGGACAAGATAATGATTGGTcaaatcaaaatcaattaaCAGCAACATTACCACCAAATCATATGTCTGGTATGACATATCCAGGTGGAATTGGACAATATTTAACAATGCCTGGTTATTCATTAAATGATGTTGGACAATTACCGCGTATGCCAATTGGACCAGCACCAATGAGAATATTTAATCCAGATGCATATTGTGAATTATGTCATAaagaattttgtaataaatattttttaaaaactcataAAGCAAATAAACATGGAATTTATACTGATCCGCCATCAAACTCATCTGAAAATAGTGGCTCATCTGTATTTCCAGGTATACCATTTTCCCTCGGTGgtattaaaattgaacaatcacaaattcaacaacaacaacatcaacaacaattacaatCTTCAATAATCGATGTATCATTAATGCCAACAATACCATGTGATATATGTCAAAAACGTTTTAAAAGTGATGAATTacttaaaaaacataaacaattaaatcataCAAATATGTTACACGATCAACAGTCTGAATCACAATCATTACCAACACCAGATACaatgaataatgatgatgacgatgatcaTGATGATCGTGATAATGGTGACGATGGTGAgaatggtgatgatgataatatacaaAGAGTTAGCAATAGTCCAAGTGTTATggaatcattatttaaacaagAATTTGGAATTGAACAAGAGGATACAAAATTCATGCCAGCACCAAGAAATTTATCACCCCAATCAATACAACAAGCTAaagaatcaaattttaatattgaaaaattacgtAAACTTGGTATATTAAATACAGATGCATTTTGTGAAATATGTTGTAAagaatattgtaataaatattttttacgtacacataaattaaaaagacatGGTATATTAATacaagatgatgaaaaatcacCAAATAATCCTGGTGCAGCAGCAACATGGCATCAAATACAAACGAGTCctctaaatttaataataaccgatagtaataatgatgattcacaatcaaatgataaaaataatgaagaatggaaatgtaaattatgttgtattaaatttcaaacaattgaactttataaattacataaatttagaattcataatacaaataatgaatgtgataaattaataaataataatattaatgatgaagAACGTACTGATTCAATATCAGaagatttacaaaaattacaaacaatgaTATTACAATTGAATGGTATTGAATCAAGTAAATCATCAACGTGTGGTATATGTGGTCGTGAATGTGAAAATCAATTAACACTTAAAACTCATATGGATATTGAACATAATAATAGTACAAATGAAGAtagattattatcatcatcgtcatcatcaccaccaccaccaccaattcaatcaactaataattcaaattattattgtacaaTTTGTGAAAAAGACTATCAAACACAAGATTTATTAAGACAACATATTAATGATGAACATAATCAAACATctttgtcatcattatcaactaataataataataatattatcaataataataatcaacagcaacaacaacaaaatataacaacagTAACAGTACCAGGATCTTTATCACAAATTGGACCACCAATACCACCACcacatgataaaaaattatcatcaatgacACCGACATCAAGTTATTGTGAGATATGTAATAAAGAAttgtgtaataaatattttatgaaaaccCATATGCAAAGAATGCATggtattgaaattgaaaatggaTCACAAATTGGTGGGGTTATTTGTAATATATGTAATAAAGAGTTGTGcagtaaatattttcttcgTGTACATAAACATAATACACATggtattgttgatgaaaatacaccatcaacaacaacaacaacaacaacaggagcaacaacaataccactaacatcattaacaacaacaccaccaatAACAGCAGCAGCTGCACTAACAACAAGACTAACACcgacaattaaaaatcaagataCACTACAAATTGATACAGATGAAAATGGTCAAACATTTAAACAAGATAATATTGGTGATCTTAGTCatcgttattttttacatttcacTGAAATATGTCCAATATGTAACACAAGATTTCGCAGTATAAAATGGCTTAAAACACATTTAATGAGTGAACATGGTAGAGCTGGTATCGATAAATGGCatgaagttgaaaataaatatcaaaatataccaaaaaataaattcaataattcatcaaCGAGTCGTACGAataatatacaacaaaatacaaatttaaaaataccaaatgGCATTGATGTAACACAAACATCATTGAAAAAtccgacaacaacaacaaccacaacgataaataatgattatactGGCAATATTAGTAATCAAGTATTGACAACGTTATTTGGTAATAATGatgaacaacaaaataaaaattatcgcTGTTCATATTGTAGTTTTACAACACCAGtattaccatttttatttcttcatgaAAGATCACATACAAGtaatcaagaaaatataacAAGTAATACAGAAAATAACTTACAATGCCCAATATgttcacaattatttttacaaccgGAATTATTGCATCACCATTTGTTAACACGTCATCAGTTATCAGgtttattatcacaatttacaaatatatcatcatcatcaattgtcaATCAAATTGCTGATATTAATCAATCATGTGAATCATTcgagcaacaaaaaaaagataacagTAATGAACAATCAACAGTACCACAgtcaaataatgatattatttcgaaaaataatacaacaacaacagcaacaaaagATGATCATAATTGTGCTGTTGAAGTTACACCACAAGGTGCATATAAATGTTCACAATGTGGTTTTGCAACagcaaatttaaatagaattaaaaaacacGTTAAAAAGGATCATCGTTGTATTGGTGATCCAACTGAATGTGTTATATCTGAACTGAGTAAAACATTAAAAGATGTtgctaataaacaaaaactacCAGCAAGTTATGCAATGCCacaagatattaattttaatcctGATTCAACTGTTATGCAACCGtttattattgaagaaaatgattcatcaacatgCATCGATGatactgataataaaaaaatattttcatctgcaTTGGTCTACTTACCGGTACGTACTCGTGTCAATAGTGTTCTTACGGCTTCCTTCACCCTTAGTCCTGcctga
- Protein Sequence
- MTSTVARESMLAPPPSELDSEGSSCGEDSRKRSRDDGNYPKKRRKQTTPVRFPITFETQSSQFNDNNQYNENNNTNDNNRDDDNDDDGDDVDDADDDDNNNDDNMDNNDSINNKDNEENYLPLQTTKDENLNTEYRCQYCGHDFDDNNNLSHHLINEHGINNITHLSSPTLQDNVRIKIENQQDDNETPVNLSGISIKNFSTSSWLTNHGQDNDWSNQNQLTATLPPNHMSGMTYPGGIGQYLTMPGYSLNDVGQLPRMPIGPAPMRIFNPDAYCELCHKEFCNKYFLKTHKANKHGIYTDPPSNSSENSGSSVFPGIPFSLGGIKIEQSQIQQQQHQQQLQSSIIDVSLMPTIPCDICQKRFKSDELLKKHKQLNHTNMLHDQQSESQSLPTPDTMNNDDDDDHDDRDNGDDGENGDDDNIQRVSNSPSVMESLFKQEFGIEQEDTKFMPAPRNLSPQSIQQAKESNFNIEKLRKLGILNTDAFCEICCKEYCNKYFLRTHKLKRHGILIQDDEKSPNNPGAAATWHQIQTSPLNLIITDSNNDDSQSNDKNNEEWKCKLCCIKFQTIELYKLHKFRIHNTNNECDKLINNNINDEERTDSISEDLQKLQTMILQLNGIESSKSSTCGICGRECENQLTLKTHMDIEHNNSTNEDRLLSSSSSSPPPPPIQSTNNSNYYCTICEKDYQTQDLLRQHINDEHNQTSLSSLSTNNNNNIINNNNQQQQQQNITTVTVPGSLSQIGPPIPPPHDKKLSSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGSQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSTTTTTTTGATTIPLTSLTTTPPITAAAALTTRLTPTIKNQDTLQIDTDENGQTFKQDNIGDLSHRYFLHFTEICPICNTRFRSIKWLKTHLMSEHGRAGIDKWHEVENKYQNIPKNKFNNSSTSRTNNIQQNTNLKIPNGIDVTQTSLKNPTTTTTTTINNDYTGNISNQVLTTLFGNNDEQQNKNYRCSYCSFTTPVLPFLFLHERSHTSNQENITSNTENNLQCPICSQLFLQPELLHHHLLTRHQLSGLLSQFTNISSSSIVNQIADINQSCESFEQQKKDNSNEQSTVPQSNNDIISKNNTTTTATKDDHNCAVEVTPQGAYKCSQCGFATANLNRIKKHVKKDHRCIGDPTECVISELSKTLKDVANKQKLPASYAMPQDINFNPDSTVMQPFIIEENDSSTCIDDTDNKKIFSSALVYLPVRTRVNSVLTASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -