Acol007099.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010001758.1:8595-12677[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0098 0.82 10.1 0.1 1 23 643 665 643 665 0.96 2 17 0.02 1.6 9.2 0.4 1 19 671 689 671 692 0.93 3 17 4.1 3.4e+02 1.9 0.9 2 23 698 719 697 719 0.91 4 17 0.011 0.94 10.0 4.2 3 23 728 749 727 749 0.98 5 17 0.0037 0.31 11.5 3.5 1 23 756 779 756 779 0.95 6 17 7.4e-05 0.0062 16.8 0.7 1 23 785 808 785 808 0.94 7 17 0.11 9.4 6.8 1.4 2 23 816 836 815 836 0.96 8 17 8.3e-07 6.9e-05 23.0 2.1 2 23 842 863 841 863 0.97 9 17 3.9e-06 0.00033 20.8 0.3 1 23 869 891 869 891 0.99 10 17 0.007 0.59 10.6 3.6 2 23 903 925 902 925 0.95 11 17 0.052 4.4 7.9 1.2 1 23 931 954 931 954 0.95 12 17 0.0025 0.21 12.0 0.9 2 23 978 1000 977 1000 0.95 13 17 0.0018 0.15 12.4 0.5 2 23 1007 1029 1006 1029 0.94 14 17 2.1e-05 0.0018 18.5 0.9 2 23 1037 1058 1036 1058 0.97 15 17 0.016 1.3 9.5 3.6 1 23 1064 1087 1064 1087 0.96 16 17 0.97 81 3.9 6.2 2 23 1094 1115 1093 1115 0.96 17 17 0.016 1.4 9.5 3.3 1 23 1121 1143 1121 1143 0.99
Sequence Information
- Coding Sequence
- atggcttgttcacaaataaaaacagttaATGATACTAAAAGAATGTTATCAAAAGCTAAACTTGTTGGTtcaacagcatcatcatcaaaaaatttatcaaaaattcccACCAcagaagatataaaaaatgaagagtTAAGTAAATATTGTCGTACATGTGCTGGTTTAAAATTACCacttattgatatatttagtGACAAGGGTAAGCAAATGCGTCTTGATCAACAAATGAaacatttagaaaatattaatagtgaAGATAGTTTGTCAACTAAAATGTGTATGGATTGTATttgtgatttaaaaatgagttacaaattttatttacaaattaaaaaagctgAAATGAAATTGATATCAATAAGCAATGAATTAtctgataaaattgatgatgaaaaaaaacgtataaataatttatcaatgcaAAAAAAAGCTGATAGTATTATTCTTACTGATagtattgatgatattgatgaaatagatgacattgatgatattgatgatattgatgatattgatgatattgatggtGACATAACGTCTTCACCATATGAACAAATTCatcacaaaaataaagaaacttCAAATGCTATGGatattgatgaagatgatttaCCAGAATTTTCACCTAATGATTCAGTACCTCATGATGATGTTGAACCAATTGAAGAATTCGATCCAAATAATGATACAATTGATTTTGAAGCAAATAACAAACAAGTAGcacaaaaaaatgttaaaataaaaaatggaaaaatggatttatcatcatatagAATTGAGGGTAAATCAATGCCAGATATGAAATTAGctaaatctaaaaaaacaCATGATGATAATAGCTACGACAATATTGAAACAATTgaagatattgaaaaatttataaaagataataatgatgatgatatcaataaacaaaaaactaaagaaataaaagataaattattagtaaaaaaatcatcaagcgACAGTAAAGATAGCTCAGAACCAATGATAAAGAAATATGCTAATAAACCCAAGGTAGTTCAAGAACCAACAGTAACAACAGTTGATTCATTAAAATCAttggaatataataaaatgcaacatttaatgaaaaaaacaaataaagttgATTCAACAAATGAAGCTGGTATTATGTATGTAACAGTTGCTGGCTCAAAACCCGATGAACTATTACTagttaaagttaaaaaagttgataaaacaaCAGCTAATAATAGCctaaattcatcaacaaatgataataataatacaaaaaaaaaagaagagccaataaaattaccaaaagaACCAACAAAACCATTAACACCAATTGAAATGGAAATTGAAGATTATAAAAAACGTAGAGAAAAATTACTTGGTACTGAAGTTATATCAGCTAGTTGTTTATTCGATGATAATCCATTACGTTTCGTAAATGATACAATAAatgaaacattaaatattGGACCAATAACATTTAATGGTGTTAAACGTGAACCaggtgaaaaaattgaagttCATAGATTATccacaataaataatacaatacttgaaaaagaagACTTAACAATACCATTTGatacaattgaaaatgatggaTTATTAAAGCCAgtgtcatttgataaattatcacgtATTAAACAAGAATGGCTTGATCCAAAATacgtaaatgtaaaaaaaaaaaaggaaacacCAGAAGCAATTGAAGCAATGAAAGTCAAAAAACATAATGacagattatttaaaattcttggtgaaacaaataaaaatgttccGAGTTTTTATGAAAACTTGAAACAACATGAACAGCTAATTGACAATATGACTGATTCTGAAATAATTGCAATGTATGAAGcacatattataaaattgagtaaaagaaaatttcccgatttaattgatgaaaataatcaatatgatGAATTGggtaacaaaaatttttatgaatgtgATTATTGTACTGAGCTATTTATGGATATTGATGATCTTAGAGAACATTTAACTGAACATGATGAAATAATGTATTATCATTGTGAAGATTGTGGTGAAGATTTTCCAACAAGTAAATCAAAACGTTCACACAATGCCGTATGTTTAAAGAGATTAGTATgcaaatattgtaattttatgcTCGACTCAATTGGTAAAAAACGTCAACATGAACAACGTCATTGTGATAGATTATTTGGACAGCTTTGTGATGTTTGTGGTGAAAAATTCAAGCATCATGGTACACTTGATCAGCattttaaaactaaacataTGTTTTGGGAAAAGAAGCATCAATGTCCAAAATGTCCAAAGAAATTTACTTTCAAGGCAAAATTAAGTTTTCATCTTAAAAGTGTACATACAACAGTACGTGCATATCTATGTGAAGATTGTGGTGctgattttaaaaatccaGCATCTTTACGTCATCATAGAATACGTAAACATAgtccaacaacaaataaaaaagagtgtAACGTTTGTCATAAAATAGTACCATATTATTCATTGTCAAAACACATGTATACACATAAAGAATACACAATAAAATGTTCACGTTgtgataaaatgtttaaaaattcatcaacattaAGACAACATTTACGTATACATGAAGATCAACGACAATATCGTTGTGAAACATGTGGTGTTGGTTTTAATAGACGTGATGGTTTACGTTTACACATGAAGGTACATAATAAAAGTGATAGTCGTGCATTTAAAGAATGCTCATGTCAAATATGTTCACAAAGATTCCCAAATCATTCATTACTTGTATTACACAGAAATCGTGAACACAAAGATGCAAAACaatatacatgtaaaatatGTAATCGTTCAATGTTATCACAACGAGCATTAAATTGGCATATGTCACATATACATAATCAATTGATACTTGATGTTGAAGAAAATGGTGAAAACAATGCTGATGGTTTGAATGATGAACGTATCGTTTGTCAATATTGCagtaaaacatttaaaactgAAATGATATTACGTAcacatattaaaaattcacataTTGAAAAAACTCCAGTTAAATGCCAAGATTGTGATGAAACATTTATATCAGAAGTTAGATTACGACATCATGCTATGAATGTACATGAACGTTTTGATGGTACATTAAAATGTCCAAATTGTGATAAAAGATTTGTAAATCAATTACGTCTCAAGACTCATATGATATCACATTCAGAAGATCGTCCATTTAAATGTGatatatgtaattttgatttaaaaactaaaatacaattattaaaacatcatcaaaataaacacAGTGATGTTAGACCCTTAAAATGTCGTCATTGTGATTGGCGTTGTAAACAAGTTAGTGCATTAGTTTGTCATGAAAGAACACATACTGATGAACGTCCATATACATGTCGAATATGTTTCCAACGTTTTAAATATCttggtgataaaaataaacatgaaagaAGACATAAGGAACTTGGTGGTTCTGGATTTAAACGTGTTGTAAAAGAAAGAACTCataaatcatcatcttcatcaacatcaacaacaccatcaaAACTTAAAATTGTCAATGAAACATCAAATTCTTCTGATCAACAAATGAGATTTGAAATTATGCAAGTTGATGAAGAACAATCAGAGCAACAATTTATTGAAGGTGAATTGATTGATCAAACCTATGAGGGACAAATGGTTTATGATGAAAGTGgatatgttattaaaaatgaaaatattgaatattacgAACAAGTTTAtgaggaACAAGAAGATACACCAGTTGCTGAATCTGATAATCCTATTCAATATATTAGTGCTGATGGAGGTGATTTTTATACTGAAGAAGTTGCTAATGttcaaataacaaatgatCAATTGATGGAACTAAATAATGGCAATTTTCAAGATGGTACAGCAGTGCATTATATTGAACAACAAGATAAAGATGgacaaattcatttaattccAGTTTCTATTACTTTGGTTGAAGACGGCACTGAACCTGTTGCAATGACAATTAGCCAatcttaa
- Protein Sequence
- MACSQIKTVNDTKRMLSKAKLVGSTASSSKNLSKIPTTEDIKNEELSKYCRTCAGLKLPLIDIFSDKGKQMRLDQQMKHLENINSEDSLSTKMCMDCICDLKMSYKFYLQIKKAEMKLISISNELSDKIDDEKKRINNLSMQKKADSIILTDSIDDIDEIDDIDDIDDIDDIDDIDGDITSSPYEQIHHKNKETSNAMDIDEDDLPEFSPNDSVPHDDVEPIEEFDPNNDTIDFEANNKQVAQKNVKIKNGKMDLSSYRIEGKSMPDMKLAKSKKTHDDNSYDNIETIEDIEKFIKDNNDDDINKQKTKEIKDKLLVKKSSSDSKDSSEPMIKKYANKPKVVQEPTVTTVDSLKSLEYNKMQHLMKKTNKVDSTNEAGIMYVTVAGSKPDELLLVKVKKVDKTTANNSLNSSTNDNNNTKKKEEPIKLPKEPTKPLTPIEMEIEDYKKRREKLLGTEVISASCLFDDNPLRFVNDTINETLNIGPITFNGVKREPGEKIEVHRLSTINNTILEKEDLTIPFDTIENDGLLKPVSFDKLSRIKQEWLDPKYVNVKKKKETPEAIEAMKVKKHNDRLFKILGETNKNVPSFYENLKQHEQLIDNMTDSEIIAMYEAHIIKLSKRKFPDLIDENNQYDELGNKNFYECDYCTELFMDIDDLREHLTEHDEIMYYHCEDCGEDFPTSKSKRSHNAVCLKRLVCKYCNFMLDSIGKKRQHEQRHCDRLFGQLCDVCGEKFKHHGTLDQHFKTKHMFWEKKHQCPKCPKKFTFKAKLSFHLKSVHTTVRAYLCEDCGADFKNPASLRHHRIRKHSPTTNKKECNVCHKIVPYYSLSKHMYTHKEYTIKCSRCDKMFKNSSTLRQHLRIHEDQRQYRCETCGVGFNRRDGLRLHMKVHNKSDSRAFKECSCQICSQRFPNHSLLVLHRNREHKDAKQYTCKICNRSMLSQRALNWHMSHIHNQLILDVEENGENNADGLNDERIVCQYCSKTFKTEMILRTHIKNSHIEKTPVKCQDCDETFISEVRLRHHAMNVHERFDGTLKCPNCDKRFVNQLRLKTHMISHSEDRPFKCDICNFDLKTKIQLLKHHQNKHSDVRPLKCRHCDWRCKQVSALVCHERTHTDERPYTCRICFQRFKYLGDKNKHERRHKELGGSGFKRVVKERTHKSSSSSTSTTPSKLKIVNETSNSSDQQMRFEIMQVDEEQSEQQFIEGELIDQTYEGQMVYDESGYVIKNENIEYYEQVYEEQEDTPVAESDNPIQYISADGGDFYTEEVANVQITNDQLMELNNGNFQDGTAVHYIEQQDKDGQIHLIPVSITLVEDGTEPVAMTISQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00132780;
- 90% Identity
- -
- 80% Identity
- -