Acol000630.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010000096.1:42202-44764[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0072 0.6 10.6 0.0 1 23 315 337 315 337 0.96 2 12 1.2 1e+02 3.6 0.2 5 21 342 358 341 359 0.91 3 12 4.5e-06 0.00038 20.6 3.7 3 23 444 464 443 464 0.98 4 12 7.1e-05 0.0059 16.9 0.5 1 23 470 492 470 492 0.97 5 12 0.00033 0.028 14.8 2.5 1 23 498 520 498 520 0.98 6 12 5.5e-05 0.0046 17.2 0.8 1 23 526 548 526 548 0.98 7 12 0.00099 0.083 13.3 1.5 3 23 556 576 554 576 0.98 8 12 1.3e-07 1.1e-05 25.5 0.5 1 23 584 606 584 606 0.98 9 12 0.0044 0.37 11.3 0.2 1 23 612 634 612 634 0.94 10 12 0.0022 0.19 12.2 3.5 1 23 640 664 640 664 0.97 11 12 1.9e-05 0.0016 18.7 0.9 1 23 670 692 670 692 0.98 12 12 0.0023 0.19 12.1 2.9 1 23 698 720 698 720 0.97
Sequence Information
- Coding Sequence
- ATGGCAAGTATAAgtgaatttgattatttatgtaGACTTTgtgcaacaaaaatattaatgggATTACCAATATTTCATGACGATTTAACTGATGATCAAATaagaaatattgataaaaaaataacatcatgTTTACCAGTTCAGATTTCACTGACAGATCAATTGCCAAAAGCTGTTTGTGAAGATTGTGCCTATAAGTTGGatcagttttataattttcgtcAGAAATCCATTGAAACAGATAAACTATTTCaaacaatgatgataaaatttgaaaataatgtacATGATGATAATGCTAATGTATCTAATATGACAGTTATCAGTAATTTACCAGGTCCTGTTGATAATGACAACGACaataatgacaatgacaatgaaaacgttgatacaaaaaataatacaacactTCATACATTACaagttattgatgatataaatattggtGGTAGTGAACAAATAATTGAACAAGTTGAAATActaaatgttgatgataatattgaagaaaGCATTGATGTACTTGATGGTGACACAGCTAGACTTGTTGATGAACATATGCGTGaggTATCAAACCATGAAATGACATTGGACATTGATGGAGAAATGACTGTTGTTGGTCATCTTGCAATTAATTACGTTACAAGTATTGACACTGAGACAACAGATCAAGAACAGCTGGTACATTATTGCACAAGTGATGGACTCAAATTTGAGacagtAACAAATAGCTCGTATAATCAATCGCACAatgaaatcattgaaaatggcattgataataatattataaatgacgAATTGAGTACAGATATTATTGATACAAATAGTATACCATCAACGAGTCATGAATCAtctgaaataattgaatatacaaAACATGGACAGCAAGCGTTGCTAGAGAGTGCATTAAATAATCCAACAACTGATGAAACTGGTTCACACTGGTATGTCTGTCCAATTTGTAATGAAGCTGCAAATGAACCAGAAAATTTATCACTTCATTATGAAgaacattttttatcttgtacatgtggtttatattttacaagtaTTGATGATTTGTcacaacataaaaataataattgtagtaatgataatagtgatagtaataatagtaaaaaaaaaattaatgatattaaagttaaaaaaaataataataaattaaaaaatacaaaatgtaaAGTTAATAATGGTAAGAATTATGGTGATGCTGATGctgataataatgttgatgatgaagatgacgaagatgatgaagaaggtgaagaagatgatgatgtagataataaaaaaaatcaaacaaatattaGGCAAAAATGGACACCAAAAATATGCCATCAATGTGGTAAACAATATcgtacaaattataaattacaagaaCACATGAGAAAGCATACTGGTGAAAAACCATTTAAATGTACAACATGTGAAAAAGCATTTAGAAGTAAAATTGGTTTAGCACAACATAGTGCAACTCATACTGGACAATTTGATTTTAGTTGTTCAACATGTGGTAAAGGTTTTCAAtgtaaaagttatttaattgtaCATCAGCGTGTACATTCAGATGCAAAACCATATCCATGTGTAAAATGtggacaaaattttaaaacaaaacaatcatTATTAGATCATGAAAATCGTCATCTTGGTGTTAAGCCATATGGTTGTGAGATATGTGGACGTGGTTTTATAACAAAAGGTTTATGCAAAAGTCATCAGAAAACACATTCTGGTCAAGACAATAGACAATATCCATGTGAAGTTTGTAATAAAATGTTTGTCagtaaaagttatttaaatacacaTTTAAGAATTCACACTGGTGAAAAGCCATATCTTTGTGAAGTATGCGGTAAAGGATTTTTAACTAGAGttgatttgaaaattcattcaacAATGCATACTGgagaaaagaaatttaaatgtgAATTTGATTCATGCAACAAGGCATTTGCTAGAAAATCAGCATTAAGATGTCATACTCGATCTCACAATGGTGAAAGACCCTACAAATGTGATGTTTGTTCGAAAACATTTACTCAATTTTCACCACTTGCCATTCACAAAAGGCTGCACAGTGGTGTTAGGCCATATGTATGTGATATTTGTTCCAAGGCATTTGTCTCGAAATCGTCAATGATGTGTCACAAAAAAAGACACAAAGCTacaccatcaacatcaacaacaacaacagcgtCAACAACAACGCTACCAACAATTACAGAAACAGTAGAACAGCAGGAATTGGAGAATCCAGATAGTCCACAAGCAATTGATGATCAAAATgatattgtcattttaaaatctGATGATGttggaaattaa
- Protein Sequence
- MASISEFDYLCRLCATKILMGLPIFHDDLTDDQIRNIDKKITSCLPVQISLTDQLPKAVCEDCAYKLDQFYNFRQKSIETDKLFQTMMIKFENNVHDDNANVSNMTVISNLPGPVDNDNDNNDNDNENVDTKNNTTLHTLQVIDDINIGGSEQIIEQVEILNVDDNIEESIDVLDGDTARLVDEHMREVSNHEMTLDIDGEMTVVGHLAINYVTSIDTETTDQEQLVHYCTSDGLKFETVTNSSYNQSHNEIIENGIDNNIINDELSTDIIDTNSIPSTSHESSEIIEYTKHGQQALLESALNNPTTDETGSHWYVCPICNEAANEPENLSLHYEEHFLSCTCGLYFTSIDDLSQHKNNNCSNDNSDSNNSKKKINDIKVKKNNNKLKNTKCKVNNGKNYGDADADNNVDDEDDEDDEEGEEDDDVDNKKNQTNIRQKWTPKICHQCGKQYRTNYKLQEHMRKHTGEKPFKCTTCEKAFRSKIGLAQHSATHTGQFDFSCSTCGKGFQCKSYLIVHQRVHSDAKPYPCVKCGQNFKTKQSLLDHENRHLGVKPYGCEICGRGFITKGLCKSHQKTHSGQDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKKFKCEFDSCNKAFARKSALRCHTRSHNGERPYKCDVCSKTFTQFSPLAIHKRLHSGVRPYVCDICSKAFVSKSSMMCHKKRHKATPSTSTTTTASTTTLPTITETVEQQELENPDSPQAIDDQNDIVILKSDDVGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00132158; iTF_00132774;
- 90% Identity
- -
- 80% Identity
- -