Acol002333.2
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010000357.1:100049-102720[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0003 0.025 14.9 0.5 2 23 379 401 379 401 0.90 2 14 3.7e-05 0.0031 17.8 0.3 1 23 408 430 408 430 0.98 3 14 4.1e-06 0.00035 20.8 2.6 1 23 436 458 436 458 0.96 4 14 0.00022 0.019 15.3 2.9 1 23 467 489 467 489 0.97 5 14 1.2e-06 0.0001 22.4 1.2 1 23 495 517 495 517 0.98 6 14 1.2e-06 0.0001 22.4 1.1 1 23 522 544 522 544 0.99 7 14 0.0014 0.11 12.9 5.2 1 23 551 573 551 573 0.98 8 14 0.001 0.085 13.3 2.0 1 23 592 614 592 614 0.98 9 14 3e-06 0.00025 21.2 1.2 1 23 621 644 621 644 0.98 10 14 0.026 2.2 8.8 1.4 1 23 650 672 650 672 0.96 11 14 3.3e-06 0.00028 21.1 0.9 1 23 678 700 678 700 0.97 12 14 0.00017 0.014 15.7 6.1 1 23 706 728 706 728 0.98 13 14 0.00027 0.022 15.1 5.3 3 23 736 756 734 756 0.91 14 14 0.073 6.1 7.4 0.9 2 23 762 784 761 784 0.93
Sequence Information
- Coding Sequence
- atgaaaatactttGTGCTGCATCAGCGTGTAAATATTCatcagaaaatgaaaattcatctgatataatatttgttagtTTTCCCAACGATGACTCGGCACCAATATGGGCACATATTTGTGGACGTCctgatttattgataaaaacaaatgaagaGTTACATATGAATTATTACATCTGTTCAAATCACATTGAAGATCGATATTTTATAAGTAAACATGATAACTTTATAAGACAAGGAGCTGTACCAACGTTATTTGGACAACAACATGATAATAACCAAATGGAATTGAATCAATGTGATACAGATTATAttgatacaattaataattatgaaacaaatttttgtgatgtaaatgttgataattttcatgatttatcatcaaaatttataaattattgtcgtATTTGTGGCGACAATAATATTGATGGTATTGatatattaacaaacaaaggtattgaattaaaattacaagaaaaaatacatttgaattTACCAATAGTTATTGATGAGAATAATTTATTGccacaaaaaatatgtaataattGTTATGATAGCTTAgaaatatcaaattcattgctgatcaattgtttaaaaacaGATATTAGATtacgtaaatattttaatttacctaaaaaaattgataattataataaatatcagtcattgataacaaaatatacatacgaaatcgataatgaaatattacttGATACAACAGCTGATGTTTCAACCAATAATAATGAAAGCTATGATAATAAtacgataaaaaatagtactaAAATAGATGATGAACcagacataaataaattattattacatcaattaaatgatgaaaatttcgaaaatgttttaaataattcagttGTATCAGATAATgaaactataaattatttgcacatcaataatgatgaagataatTTTCAAGCAACATGTGATAATGAACaagtattaatattaacaaatagtAAATCACAAATACCAAGTGTTTTATCTGATGAAAACAatgatgtaaattataataataaaaatactgacAATAATTGCAATGAGTCATTTGAAATACTTGAAAGTAGTTTAGATattcataagaaaaataataatataaaaataaattcggtTGTATTAAAACGTCGATGTGGTTATTGTTCAATGCCATTTACAACgaaaaaagaattacaaaGTCATATAGGTGAAAAacattgtgataaaaaaatattatttaaatgtagtatttgtgataaaaattatgaaaaatggtCAAGCCTAGATGTACATGAGGCAACACATCGTCAGGATAAACCATATTTATGTGATCTTTGTGGTAAAAGTTTTAagcattcaaataatttacgaGGTCACAAAAGAATTCATCTTGAtgtatcaaaaaagaaaaaatataattgtgaaATTTGTTCGAGTACATTTAGATCAagatttCATTTGAATGAACACATTAATCAGCACAATGGATCAACACCATACAATTGTGAAGAATGTGGTAAAGCATTTTCAAAAAGAATTCAATTACGACAACATAAACAAACACAtggtattaataaatatacttgtcCAATATGTAACTCTACATTTAGTCGTCGAGGTAATATGAATAGCCATATTAAAAGACACAACAATTCAACTGGAATGTATAAATGCAGtgtATGTGATTGTCAATTCAAAACAATGagtgatataaaaaaacatcgtAAACAACACACGAAAAATGAAATACTTGAaagtattaaaagaaaaaatatcaacaaaccAATACATCAATGTAATATATGTTTAcgtatatttacaaaatatacattattattgaatCATGAACGTATACATAATGgcgaacaaataaaatatgaatgtGATAAATGTGGTAAAAAATTATCgagtaaaaattcattaaaatatcatatacGTTCAGTTCATACAACTGATAGACCTCATATTTGTCAATATTGTGATGATTCATTTGtatcaaaatattcaaaattaatacatgAGAGAGTACATACGGGTGAACGTCCATATGCATGTGATAATTGTGATATGCGTTATAGAAGTTCAAGTAATCTTAGTCAACATATGAAGTtacattttaatgaaaatccTCATACTTGTCAATATTGTTCGAAAAATTTTACAAGAAAATGTGCTTTAATTGATCATGAACGTACGCATACAGGTATCAAACCACATTTATGTTTAATATGTGGTAAAAAGTTTAGTCAAAAATATGATCTAACAAAACATTGcaaaattcattataataaattattaaaatgtgaaaaatgtaatgaaagatttttaaataagactgatatattaaaacatttagaaaataatcatttagataatgccattaaaaaaacatttataaatcatgaaaaaactGAAAACTACACGGTGAACAATTTAGATGTTAATAGCACTGTTGATTTAAGCAgtttagatattttataa
- Protein Sequence
- MKILCAASACKYSSENENSSDIIFVSFPNDDSAPIWAHICGRPDLLIKTNEELHMNYYICSNHIEDRYFISKHDNFIRQGAVPTLFGQQHDNNQMELNQCDTDYIDTINNYETNFCDVNVDNFHDLSSKFINYCRICGDNNIDGIDILTNKGIELKLQEKIHLNLPIVIDENNLLPQKICNNCYDSLEISNSLLINCLKTDIRLRKYFNLPKKIDNYNKYQSLITKYTYEIDNEILLDTTADVSTNNNESYDNNTIKNSTKIDDEPDINKLLLHQLNDENFENVLNNSVVSDNETINYLHINNDEDNFQATCDNEQVLILTNSKSQIPSVLSDENNDVNYNNKNTDNNCNESFEILESSLDIHKKNNNIKINSVVLKRRCGYCSMPFTTKKELQSHIGEKHCDKKILFKCSICDKNYEKWSSLDVHEATHRQDKPYLCDLCGKSFKHSNNLRGHKRIHLDVSKKKKYNCEICSSTFRSRFHLNEHINQHNGSTPYNCEECGKAFSKRIQLRQHKQTHGINKYTCPICNSTFSRRGNMNSHIKRHNNSTGMYKCSVCDCQFKTMSDIKKHRKQHTKNEILESIKRKNINKPIHQCNICLRIFTKYTLLLNHERIHNGEQIKYECDKCGKKLSSKNSLKYHIRSVHTTDRPHICQYCDDSFVSKYSKLIHERVHTGERPYACDNCDMRYRSSSNLSQHMKLHFNENPHTCQYCSKNFTRKCALIDHERTHTGIKPHLCLICGKKFSQKYDLTKHCKIHYNKLLKCEKCNERFLNKTDILKHLENNHLDNAIKKTFINHEKTENYTVNNLDVNSTVDLSSLDIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00132757;
- 90% Identity
- iTF_00132757;
- 80% Identity
- -