Acol004458.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010000874.1:22263-25759[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.7 4.7e+02 1.5 4.5 1 20 13 32 13 35 0.93 2 20 0.02 1.7 9.2 0.4 2 23 42 62 41 62 0.95 3 20 1.5e-05 0.0013 19.0 3.6 2 23 122 144 122 144 0.96 4 20 7.1e-05 0.006 16.9 6.7 1 23 150 172 150 172 0.98 5 20 0.007 0.59 10.6 0.3 1 23 176 198 176 198 0.97 6 20 3.8e-06 0.00032 20.9 1.2 1 23 204 226 204 226 0.97 7 20 5.1e-06 0.00043 20.5 0.8 1 23 232 254 232 254 0.98 8 20 0.8 67 4.1 2.6 1 23 260 282 260 282 0.96 9 20 1.8e-05 0.0015 18.8 0.6 1 23 288 310 288 310 0.98 10 20 1.2e-05 0.00098 19.3 1.6 3 23 318 338 316 338 0.96 11 20 3e-06 0.00025 21.2 2.2 1 21 344 364 344 365 0.95 12 20 1.2e-05 0.001 19.3 3.6 1 23 425 447 425 447 0.98 13 20 0.00011 0.009 16.3 2.0 1 23 453 475 453 475 0.97 14 20 0.0011 0.093 13.1 2.1 2 23 482 504 481 504 0.95 15 20 0.0004 0.033 14.5 4.7 1 23 509 531 509 531 0.97 16 20 0.00015 0.013 15.8 1.2 1 23 540 562 540 562 0.95 17 20 1.2e-05 0.001 19.3 0.2 1 23 569 591 569 591 0.98 18 20 3.8e-05 0.0032 17.8 4.2 1 23 597 619 597 619 0.98 19 20 3.3e-07 2.7e-05 24.2 1.6 1 23 625 647 625 647 0.98 20 20 3.2e-05 0.0027 18.0 1.1 1 23 653 675 653 675 0.98
Sequence Information
- Coding Sequence
- ATGAGATGTCATCAAATGCCaagtacaattaaaaaatatacatgtatggaatgtcattttaaaacatattATGAACACGGTTACAAAGAACACATGTGGTCTCATGCAAATGACAGTAGAGTACCATGTAATATTTGCTATAAAGTATTGAAACGTTCTTATATGAGTAATCATATGAAAATTcatgataCTATTGATACAGAAGAAATAGATTTAGATATTGTTGAAGAGAATAAACATAGACCAGATTTTGAAATTGATGATTCAACaagtacaattaaaaaattaaatattaaaaaaaataaaagtaaaaaattatcatcaaaaaataaaaaaactgaaaaggTAATTGATTTTGAAGGTGAATGTGATGTATGTAAGAAAACTTTTACAACaatgaaacatttaaaaaaacacataattAAATCACATACAAAAGAAACACCATATCCATGTGAAAAGTGTAGTAAATGTTTCAAGACACATGAattcttaaaaattcatatgaaacAACATAATAAACGTTTTATTTGTGACATATGTGGTGCATCAAAAGTATCAAATTATGATTTACAATTACATAAAAAGAAACAcaataaagaatatatatttttttgtgaaatatgTAATAAAGGTTTTTATACAAATCAAACATTACAAAGACATATTGTAACACATAcacaagaaaaacaatttatatgtaCAATTTGTAAACAATCATATGCAAGCTCAGCATATTTAAATACACATATGAAATCTCATGGTGAACGTGAAacttttaattgttcaatttgtgattttaaaaGTCATTGGAAATCAGCATTAAAAACACATTCAAAAATTCACAGTGGTGATAATCAATATCCATGTAAAATATGTACTAAAGTTATGTCaagtcaaaattatttacgaGTACATATGCGTTTACATAGTAGCGAAAAACCACATCTTTGTACAGTTTGTGGTAAATCATTtagtgttaataaatatttaataatacatagTAGAACTCATACTGGTGAAAAACCATTTGAATGTCAAATATGTCATAAACGTTTTACCCAACAAAGTTCACTTAATTCACATAAAAAAgTGTTGTCTTCTTCAAAGGAGGCTAAACCAAAAGTTAATAGCAGTtctaaaaaatcacaaaaaccAGTTATATCACAGCCAGTTAATCACGCAAGTGTTATACTTTATTTACCAGAAAATATAACATCAAAAACATGTGGAAGTCCTACACATTCAGTAACACACAGTGATTTACGTCCTTATAAATGTAATGTAtgtgaaaaatcatttaaacgtTCATGCACATTagcaatacataaaaaaattcatggaaAAGAACGTAAACATATTTGTGAAGTATGTCAACATgcatttatacaaaaaacagCATTAGAAGTACATCGACGTcgtcattttgaaaattttagattACGTTGTGAATATTGTGATAAAGGTTTTGTAACAAAAGCTGAACATCATGCACATATGAATGTTAAACATGGTGCAAGAGAACATGTTTGTACAACATGTCAAAATTCATATCCAAATAATCATAGTTTAGTACGACATATGAAAAAACATGATCCAAATTATAAACCAATATTACATTATTGTAATGATtgtgataaatcatttttatcaaaaagatCACTGATAGCACATATTGGTAATCAtactggtgaaaaaaaaaaatttaaatgtgatATTTGTGGTAAATTTATAGCATCAAATGCATCATTACAAGATCATTTACGACTACACAGAGGTGATAAGCCATATATATGTGATGTTTGTGGTCATACATTTCATAAACGTGGAACATTAATGACTCATCAACGTACACATACTGGAGAACGACCATATTCTTGTGAAATATGTAACAAATCATTTACACAACGTTCTTCTCTTGTCATACACAAAAGATATCATACTGGTGAACGACCATATGAGTGTTCACATTGtgacaaaaattttgtatCAAGAGCTCTTCTTAATGGACATTCCAAAGTTCATagataa
- Protein Sequence
- MRCHQMPSTIKKYTCMECHFKTYYEHGYKEHMWSHANDSRVPCNICYKVLKRSYMSNHMKIHDTIDTEEIDLDIVEENKHRPDFEIDDSTSTIKKLNIKKNKSKKLSSKNKKTEKVIDFEGECDVCKKTFTTMKHLKKHIIKSHTKETPYPCEKCSKCFKTHEFLKIHMKQHNKRFICDICGASKVSNYDLQLHKKKHNKEYIFFCEICNKGFYTNQTLQRHIVTHTQEKQFICTICKQSYASSAYLNTHMKSHGERETFNCSICDFKSHWKSALKTHSKIHSGDNQYPCKICTKVMSSQNYLRVHMRLHSSEKPHLCTVCGKSFSVNKYLIIHSRTHTGEKPFECQICHKRFTQQSSLNSHKKVLSSSKEAKPKVNSSSKKSQKPVISQPVNHASVILYLPENITSKTCGSPTHSVTHSDLRPYKCNVCEKSFKRSCTLAIHKKIHGKERKHICEVCQHAFIQKTALEVHRRRHFENFRLRCEYCDKGFVTKAEHHAHMNVKHGAREHVCTTCQNSYPNNHSLVRHMKKHDPNYKPILHYCNDCDKSFLSKRSLIAHIGNHTGEKKKFKCDICGKFIASNASLQDHLRLHRGDKPYICDVCGHTFHKRGTLMTHQRTHTGERPYSCEICNKSFTQRSSLVIHKRYHTGERPYECSHCDKNFVSRALLNGHSKVHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -