Acol009427.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010003102.1:8527-10566[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6 4.3e+03 -2.6 0.0 21 38 87 105 87 108 0.69 2 2 4.9e-11 8.1e-08 31.7 0.1 3 36 208 241 206 248 0.91
Sequence Information
- Coding Sequence
- ATGCCAAGATCACAATTTGATTGGATACCTTTACAGCAACCATCACAGCAACAACAgctacaacaaaaaaaaaaaaaatcaatacgtAAAACAAGaggaagaaaattaataaatgaatatggTTGTAACAtatgtggaaaaaaatttttaacaatacatAATCTTAAATCACATCAAAGACGTTATTGTGGTGTACCAAGAAACATAAAATGTGGTCATTGTAATCATCGTTGTAAACGTGTTTGGGATATGAAAGTACATCTTGCTGGTGTGCATGGAATAACAAAATCAAATGTTTTAATGAATCATTTACAAACTGGTCATGCAGCATTTATAGTCGATAGTAAGACATGGTTGGAACCATCATCAAGTGTTAAGTTGTCTGACGACGCTAAATTTACATGTAGCAAGtgttataaaacatttaaatcgAAAACTCATTACAATGAACATCGACGTGCCAAGTGTGGAAAAGTTTGTTATTTTGGTTGTTCATATTGTGGATAttgtacaaacaaaaaatggaATCTTAAACTTCATTTGAAACGCAGACATCAAGCATTATTAACACCAACAAgTCGACGAAGAAGACGTCGTCAacgtaaaaaagaatatagttatgaaaatttaaataaagctATGGCTGCTATTTCAATGGGTTTATCATTCAGAGAAGCTGGAAGACAATATGAAGTACCAAGGACAACATTACaacattATCGAGGAATTCGTTATGCCAAGTCTGAACGTGTTACATATCCATGTAGTAATTGTGGAAAGATATATgcatatttatcaagtttagCTAGACACAAAGCTAAAGAATGTGGAGTTGAACCAaaattattttgtaaaatatgtcCATATAAAACAAAGCAtaaatcaagtttaaataCACATATGAATAACAAACATTTGAAATTTtcgattgataataattgtgatgCCGCTGAaggatacaaaaaatttatggaacaacaataa
- Protein Sequence
- MPRSQFDWIPLQQPSQQQQLQQKKKKSIRKTRGRKLINEYGCNICGKKFLTIHNLKSHQRRYCGVPRNIKCGHCNHRCKRVWDMKVHLAGVHGITKSNVLMNHLQTGHAAFIVDSKTWLEPSSSVKLSDDAKFTCSKCYKTFKSKTHYNEHRRAKCGKVCYFGCSYCGYCTNKKWNLKLHLKRRHQALLTPTSRRRRRRQRKKEYSYENLNKAMAAISMGLSFREAGRQYEVPRTTLQHYRGIRYAKSERVTYPCSNCGKIYAYLSSLARHKAKECGVEPKLFCKICPYKTKHKSSLNTHMNNKHLKFSIDNNCDAAEGYKKFMEQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00131570;
- 90% Identity
- iTF_00131570;
- 80% Identity
- iTF_00131570;