Basic Information

Insect: Aphidecta obliterata
Gene Symbol: chn
Assembly: GCA_963966015.1
Location: OZ014436.1:13917909-13923062[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.4 7.8e+02 1.4 0.6 1 9 154 162 154 177 0.77

2 9 0.00053 0.056 14.4 0.7 1 23 244 266 244 266 0.97

3 9 0.00083 0.087 13.8 4.0 1 23 272 295 272 295 0.96

4 9 0.0019 0.2 12.7 4.0 1 23 381 403 381 403 0.98

5 9 0.054 5.7 8.1 0.1 1 23 407 430 407 430 0.96

6 9 2.2 2.3e+02 3.0 0.2 3 23 435 455 434 456 0.85

7 9 0.0076 0.8 10.8 0.8 1 23 573 595 573 595 0.97

8 9 0.42 44 5.3 5.7 1 23 616 638 616 638 0.97

9 9 0.0036 0.38 11.8 2.1 1 22 744 765 744 767 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.4	7.8e+02	1.4	0.6	1	9	154	162	154	177	0.77
2	9	0.00053	0.056	14.4	0.7	1	23	244	266	244	266	0.97
3	9	0.00083	0.087	13.8	4.0	1	23	272	295	272	295	0.96
4	9	0.0019	0.2	12.7	4.0	1	23	381	403	381	403	0.98
5	9	0.054	5.7	8.1	0.1	1	23	407	430	407	430	0.96
6	9	2.2	2.3e+02	3.0	0.2	3	23	435	455	434	456	0.85
7	9	0.0076	0.8	10.8	0.8	1	23	573	595	573	595	0.97
8	9	0.42	44	5.3	5.7	1	23	616	638	616	638	0.97
9	9	0.0036	0.38	11.8	2.1	1	22	744	765	744	767	0.88

Sequence Information

Coding Sequence: ATGGAGGTGGCAATGTCCCTTCCAGGCTCTGCCATAGACTGTTATGAAGATATGTTCAAAGAAATAACCAGAAAACTATACGGAGAAGACGGTTTGCCCGAACTGAACGTGAACGATAGATTATCCGGCAGTATTGCAGATCGCACAAATCAGACGAACGAGTTCGAGGTGGATAACCACCTCCTTAAAAGCGACGACCATTTGACCGCTCTAGGATTAGCTGCTTTGATGCAAAATGGCTTTCCTGCGAATGGAATCCTCAACACCCCGTTCAGTCATCCACAGCACAAGGTCGAGGATATATGGACAGCTAGCGAGGAAGTGTTGCCTTGGACCCAGTCTAAAGTTGCTACGTACAACCCTCTCCAGAAAACTTTCCGTTGTATGGAGTGTGATTGTGCAGGGAATTTGAACAAGGTTGTTGAACACTGGTTAGGCACACATTCTAACATCAGAGCATTCCGATGTCCTCAGTGTCCATATGAGAGTGCTTGGGCGAAATGCGTCAGAATGCACCTTGGAAGACAGCACAATTTGGAACTAGACGAGTCGAGAGCTTCCGATATAATTTTAGAGAATAATCCTGTTTTACAAGAACTCACTAAATATCTCCAGAGGCTCAAAACCAAACTGGATACAGTTTTCATTCCTAAGACTAGTTCACAAGACGATTATCAGCAGAATATACGACAACAAAACATTGATAACAGTAACCAAAACAATAAAAGATATAATTGTACATATTGTCCTTATGCTACGGATAGACGAGACCTTTTCACCAGACATGAGAATATCCACAGAGAAGAGAAACCTTTCCAGTGTTACGTATGCCAAAAACAGTTCAACCGAGCCGATCATGTCAAAAAACACTTCTTGAGGATGCATAGAGAACACCCATATGATTTGAATAGAATCAGGAGGCATCCGCCGAAAAACGCTTCTGGCATGTCATACTACCAAAAATATAACTCGGGATTAACAAACCCAACTCCTGATACCATGCCCAGTTCATTATCTATTCCAAGTGGGCTCCAGGGTTTGAATAGACAAGTCGTACCCCGAATACCTCCACCCAAAACTCCATTCACCAAGAGCGTTATTCCTCCAAAGTCTTCTGGGAAAAAACGAGGAGAGAAGAGATTCAGCTGTTGCTACTGTTCTTGGTCAGGCGTGGACAACTGGTGTCTGAAACGGCATATGAACACACATCTCAAACCGTTCGTATGCGTTTTATGCGACTATAAGGCTGCCAGGTCAGAAAGATTGACCACTCATGTGCTCAAAGTTCACAATAAGAGAGCATGTGGTAAGTGTAGTTTTCTGGCAGACGAACCATCGCAACTGATCGTACACCAGCAAGAACATCAtccATTGGAACACAAAAACAGAACTGTCTCTAATCCATCTGTCTTAAGGACCAATATGTTCAACGGTAATAGTACAAATTCTTCATCGCCATGCAGtCAAAACGTGGCGCCAGCGAGACTATCCGGCCACCAAACGAAGAGCAAAACGTCTTCGTCGAAACAACACGGAGCGGCGCGTCTGTTCAGCTACATGGAGGCGAGCGATGGTTCCGAACCGGAAATGGAGACGAGACCTAGCGCAATGGACAGACTCAACATTTCTCACAGGATCCAATCGGATTTTCCTGAAGCGGGAGATGTGAGCGAGATTAGGGCCGAAGATGAACTAGACGAAACTGAGCTTCCTCTATTTATTTGCCCTTCCTGCGGTTGTGAATTCGAAGATGACACGTCCCTGGACACCCATCAGTACACACATCGCATTGCTACATCTCCCGCCAAATGTGAATCAAAAGAGAATGTTGATCCCCTACCAAGCTATAAGTGTCATATGTGCGATTCATCTTTTGAGTGCCAAGCCCATATAATCAGTCATATGTCCCAGCATTCTACTCTGAATACGAATTGCATCGTCAAACACGAGGTTCGTCTAAGAAGACGGAAACAGGTGAAGCCACAAAAGGTTACAATACCATTCTGGGACGCTTCCGAAGTGGATATTCTTCGCCATTTGAACGGCAAGCTGCGGTCGTGGCGAAGCACCTCTTCAACCACCAATATAAAGTTGGCAGATAAGTATTTAGCTCAGCTGATCACCAAACGCGGCTTCACCTGTTTCCTCTGCCCAAGGAACAAGATAACAAGGTACCACACCAAATCTTCAGCAGCTCTCCACTTCTTATGGCGCCACAGTCTTCCCAAGTTTCAGTGTGAACACTGTGATGCCAAGTTTCGGCATAGGTACCAAGTGATACTGCATGGAGGTAGAGTACATGTCAAAGAGCCAATTCCAATCAATCAAATATCATCTCACTCTTCAAATATGCCATCCCAAGTACCACCAGAACTGAATTCCGTTGGTGTCCCGAAATTGGGCGAACTTGGTATGGCCTTTTTCGACCACTCCCTGATGCAGTCAACGAACTCTCTCAACCATCTGCATATAATTATACCCACCTTTCCACCAAACTAA
Protein Sequence: MEVAMSLPGSAIDCYEDMFKEITRKLYGEDGLPELNVNDRLSGSIADRTNQTNEFEVDNHLLKSDDHLTALGLAALMQNGFPANGILNTPFSHPQHKVEDIWTASEEVLPWTQSKVATYNPLQKTFRCMECDCAGNLNKVVEHWLGTHSNIRAFRCPQCPYESAWAKCVRMHLGRQHNLELDESRASDIILENNPVLQELTKYLQRLKTKLDTVFIPKTSSQDDYQQNIRQQNIDNSNQNNKRYNCTYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHREHPYDLNRIRRHPPKNASGMSYYQKYNSGLTNPTPDTMPSSLSIPSGLQGLNRQVVPRIPPPKTPFTKSVIPPKSSGKKRGEKRFSCCYCSWSGVDNWCLKRHMNTHLKPFVCVLCDYKAARSERLTTHVLKVHNKRACGKCSFLADEPSQLIVHQQEHHPLEHKNRTVSNPSVLRTNMFNGNSTNSSSPCSQNVAPARLSGHQTKSKTSSSKQHGAARLFSYMEASDGSEPEMETRPSAMDRLNISHRIQSDFPEAGDVSEIRAEDELDETELPLFICPSCGCEFEDDTSLDTHQYTHRIATSPAKCESKENVDPLPSYKCHMCDSSFECQAHIISHMSQHSTLNTNCIVKHEVRLRRRKQVKPQKVTIPFWDASEVDILRHLNGKLRSWRSTSSTTNIKLADKYLAQLITKRGFTCFLCPRNKITRYHTKSSAALHFLWRHSLPKFQCEHCDAKFRHRYQVILHGGRVHVKEPIPINQISSHSSNMPSQVPPELNSVGVPKLGELGMAFFDHSLMQSTNSLNHLHIIIPTFPPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00020960;
90% Identity: iTF_00965685;
80% Identity: -