Aobl017783.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014433.1:13895606-13898598[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.9 6.2e+02 1.7 0.4 3 23 379 401 378 401 0.87 2 11 1.5 1.6e+02 3.5 3.0 1 22 502 523 502 526 0.90 3 11 0.011 1.2 10.2 0.2 2 21 583 602 583 606 0.90 4 11 0.0057 0.6 11.2 0.8 1 23 615 638 615 638 0.96 5 11 0.02 2.1 9.5 1.5 1 23 643 666 643 667 0.93 6 11 0.029 3 9.0 0.9 2 23 687 709 686 709 0.94 7 11 0.00054 0.057 14.4 0.0 2 22 715 735 714 735 0.96 8 11 2.2 2.3e+02 3.0 0.3 1 17 748 764 748 770 0.81 9 11 0.00049 0.051 14.5 1.3 1 23 792 813 792 813 0.85 10 11 0.0022 0.23 12.5 2.8 1 23 819 841 819 841 0.93 11 11 1.5 1.5e+02 3.6 0.4 1 12 860 871 860 872 0.86
Sequence Information
- Coding Sequence
- ATGGATGACTTCGAAGATGACACTCACTTCTGCCTGAAGTGTCACAGCACAATCATAGGGCTCGAATTTTACGTGACCCACCGCAAGAATAACTGCATGAAGCAAGAAGATGCATCATTTCCATCGCTCAAAGCAGACGATTTCTTTTCCTCTCTGGAGCTCCAAAGTAGTTCCAAAAAGCTACTTCAACAATCCACATCGGGCAAACATCTCAGTGGAATCCTGACCAGAAGCAAAGTTACCGCTTTCAAAGAAACATTGGAACCATCCAAATCCGGTAAGAATGTTTGGATTGCAGGTGTCCAAGAAAAAGAACCAGAGTTCGAAGATAACCAGAGTAGTTTCATGAAATCAGTGACAAATAAAGATATAGCTAGAGCTAAGGACATACAAAGATTACAAGGTTATGACAGTGAAGTGGAGTCAGATGATTACGAACTAGATGAAGAAACGAGTGATGAGGATGCGCCTCCTAGAAACCATACAGGTGGAAAATGGAAACCGTCATCCCCGATTTACTGGAAACAGTCACAGGCTGAATCTGAATGGAGACCTCCTCCTCCTTCTTTCACTGGAGGCAAATGGAAACCTGCTCCAAGTAAAAGAACTTATTCTCCTCCTCCTCACCACATTAGGGGTAAATGGAAGCCAGAACAATCCAATGAAACAGAAGACCCACATTCTCTTTCATTCAGTGGGGGTAAATGGACTCAACAGAGGAAACAAGAGCATCCTGAAATTCCTCCTAGTTTTACCAGGGAGAAGTTAAGAGCTAAATCAGATATGTCGATCGAAAAAGATGAATACCATCTCTCTCCAGAACCTCCAAACGACAAATGGAAACTTATCGAACTAATTCCTTCGTCGTACACCAAGGGAAAATGGAAACCCTCTTCGCCTGATCTAATCCCATCTTCTTACACCAAAGGAAAATGGAAGCCTGAAACATCCCCGGAGCCTACATCGTCGAGAACAAAACCACCTAATCTCGAGAATGATAATACAGTCTCCAAGGAAGTAACTTCGGAGTTGATAAAAGATGGGTGGGTGCCCCCATCGAAGGCTCCCACAAAGGAGCAGAAGCACACTGATGATTCGCCATTCATTAAGTCTAGTGGTTCCGTACAGTATTGGTGCAAGCCATGCAATCGTCGTTTAGCCTCCAAAGTAGTCTATGAGCGCCACCTCAAATCCGAGTTTCACATCAAGAGAAACCTTCGAGAAAATGAATTAGAAGAAAATTTGAACTTCTTCAAAGAGCCACGTGGAACTAAGAGGAAGTCAGAACCCGTCCAGGCAGAAAAAAAGCCGGAAAGTCCAGAGAGCAGAAGGATCAGGAGAAAAACTTTCGAGAAATGTCAAGTTTGCAACTCCAAGGTCAATATGAATTTGATGGGTAAACATCTCATCTCCCATTATCACTGCAGGAAGAGCGACTTAGCATCAGATTCTGCTCGAAGCATGATTCTCGAATATTTCCACAGCATAATCAAGCAGAGCCCATTTCAATGCAAACCTTGCAAATATTACTTCAATAACCACAAAGACTTCCTCGACCACTGGCTGTCCCAAGACCACATATCGAAAACAAACGATAAGATGGGTAAATTTTTGTGTTCTTATTGTAAATTTTCTTGTGTGGAGAATGAAGATATGTATCACCATTTCAAATCTCAGAATCACAACGAAGTGGTATCTGTGATCAACAGGTCAGTTCCCATAATCATCAAAAAGGTTTACTACAGAGAATGTGAAACTTGCAAAGAAAGCTTTCCGCTACTTATTCAGTTAAAGAAACACATCGAGAATACAGGGCATATAATGGGAAACGAATTGAATGAATTCAAGTGTAACGTTTGTAAGCAAAATTTGAATTCTGAAATAGCTCTACAAAGACACAAGAAAAATGTACACGAAATCAAGAGCTTCCTATGTGGGACCTGCGAATTGACATTTTCCAGCCTCAAGGATGTTAAAGAACACAGGAATTCTGAACATCATTATTATGCTACCCTCGATAAAAAGAAGAACAATGGAAGTGGCAAGAGTTTGGAGAAAAAATGTCAATATTGCACTTTGGTTTTCGATAACTTcctgaaattgaaagaacacATCGGAAAGGAACACAAGGAGTTCCATACTAGATGTCCCCGGTGTGGTATGTCTTTCATAGTCCCTCAAGATCTCTCTGTCCATTTGAGGACCAAGTCCTGCAAATTGGAAGAACAACCGCCGAAGAAGTTCACTTGCAACACCTGCCCATTTTCGGTAGACTCGGAAGCTCAACTTCTTTTTCATGAAACTTTACATACGGAACCTGTCCACATGTATCCTGATAAAAAACTTTCAAATGATAAGAAAGCAACGCCCCATTATAAGTGTCCTAAATGTCAGAAATTCTTTCCAAGATCTTCGTTATTAGGTCATTTAAGGCTCCACACCAAGGAAAGGCCCTATAAGTGTTCGTATTGCGATCAAACGTTTGTGAGAAAGAATAACTGGCTCTTCCACGAAAAGAAACATACTTCGGTGAAGGTTGAGGTCAAGGAGGACAGTCATGGTGTTAACGAAAGGCCGTACTTATGTTCGACATGTGGTGCTAGCTTCAGAAAAAGGTAG
- Protein Sequence
- MDDFEDDTHFCLKCHSTIIGLEFYVTHRKNNCMKQEDASFPSLKADDFFSSLELQSSSKKLLQQSTSGKHLSGILTRSKVTAFKETLEPSKSGKNVWIAGVQEKEPEFEDNQSSFMKSVTNKDIARAKDIQRLQGYDSEVESDDYELDEETSDEDAPPRNHTGGKWKPSSPIYWKQSQAESEWRPPPPSFTGGKWKPAPSKRTYSPPPHHIRGKWKPEQSNETEDPHSLSFSGGKWTQQRKQEHPEIPPSFTREKLRAKSDMSIEKDEYHLSPEPPNDKWKLIELIPSSYTKGKWKPSSPDLIPSSYTKGKWKPETSPEPTSSRTKPPNLENDNTVSKEVTSELIKDGWVPPSKAPTKEQKHTDDSPFIKSSGSVQYWCKPCNRRLASKVVYERHLKSEFHIKRNLRENELEENLNFFKEPRGTKRKSEPVQAEKKPESPESRRIRRKTFEKCQVCNSKVNMNLMGKHLISHYHCRKSDLASDSARSMILEYFHSIIKQSPFQCKPCKYYFNNHKDFLDHWLSQDHISKTNDKMGKFLCSYCKFSCVENEDMYHHFKSQNHNEVVSVINRSVPIIIKKVYYRECETCKESFPLLIQLKKHIENTGHIMGNELNEFKCNVCKQNLNSEIALQRHKKNVHEIKSFLCGTCELTFSSLKDVKEHRNSEHHYYATLDKKKNNGSGKSLEKKCQYCTLVFDNFLKLKEHIGKEHKEFHTRCPRCGMSFIVPQDLSVHLRTKSCKLEEQPPKKFTCNTCPFSVDSEAQLLFHETLHTEPVHMYPDKKLSNDKKATPHYKCPKCQKFFPRSSLLGHLRLHTKERPYKCSYCDQTFVRKNNWLFHEKKHTSVKVEVKEDSHGVNERPYLCSTCGASFRKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -