Aobl011825.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014430.1:36192398-36194538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.1e-05 0.0064 17.4 3.6 1 23 132 154 132 154 0.97 2 13 0.052 5.5 8.2 0.2 2 23 161 182 160 182 0.95 3 13 0.032 3.4 8.8 1.3 1 23 191 213 191 213 0.97 4 13 0.0005 0.053 14.5 2.0 1 23 221 243 221 243 0.97 5 13 0.13 13 7.0 0.1 2 21 250 269 249 270 0.93 6 13 0.00041 0.043 14.8 1.8 1 23 280 302 280 302 0.98 7 13 0.00033 0.034 15.1 1.7 1 23 311 334 311 334 0.96 8 13 0.02 2.2 9.4 4.3 1 23 343 366 343 366 0.97 9 13 7.6 8e+02 1.4 1.6 2 23 374 395 373 395 0.90 10 13 0.22 23 6.2 0.3 1 23 403 426 403 426 0.93 11 13 0.025 2.6 9.2 2.0 2 23 513 534 513 534 0.98 12 13 0.00047 0.049 14.6 0.4 3 23 546 566 544 566 0.95 13 13 0.33 34 5.7 3.5 2 23 592 613 591 613 0.96
Sequence Information
- Coding Sequence
- ATGGATAGGAATTCTGAACTGGAAAATGAAGTTATCAAAGTTATTATCGTCAATGAAGATGGTACCGAAAATGAGGTTGATCCGAAAACGCTTAATTGTCTAAAAGTTGAAATTTCGCATAATGATGATGGTTTCGATTCGATAGATGAAGATGGAATGTCAGACGAAAATAACGATATTTCCCAGGAGGATGCTTTGCTACTCGAAAATATCAAGGTGGAAGTGATTGAGGATCCAGTACTCGAATTCGGTGAATACATCTTGTCACAAAATTTGGAAGAATATTctgaaaaggaatatttccaccAGTACATAGAAAATGAAGAGAACAATCCATCCAGAAAACGTAAGAGGGGTAGACCATCTATTTTGGAGACTAACAAAAAAAGGAATCACGTCTGTGACATTTGTGGATATTCTTCGTACCAAAAAAGTCATTATAGGCGCCATATAACAATTCATTCTAAACCAGAGGGAATTCGATGTAGTATATGTAGGAAAGAAATGCAAGGAAAGTCTGAACTGACGGATCATATGGAAGATCATAGATCTACAATTGACCGAGATAGATTTCAATGTAATCTCTGTTCATATTCATCTAAGAAACTAACAAATGTAAGTCAGCATACTGAGATACATTATAAACCGGAGAAAATAAAGTTTGATTGTGAGAACTGCGATTTCACTACGACTAATCGAACACTTTTCAAAAAACATCTCAATGTACATGGAAATTCGAGGAGTACAAAATGCCCTGTATGTTTGGTGGTCTTTAAAACTATGGCAGCAAGAAGAAAGCATcttttgaaatacaaaaatgGCCCAGATCCAAATAAATACCAGTGTCCCGAGTGTTCTTATAGAACCACAAAGTTCAATAACTTCAAGCAACATATGGTGGTTCATCGAAACGAATACGAAATCGAGATGTTTCAATGTTCGTACTGCCCTTTCAAATCCAAAAGAAAAACAGACTTGAGACAACACGTTATCGTAAAACATAAAACCGACGAAGAAGTGCTTTTATTCAAATGTGATTTCTGTTCTTATGAATCCAGAAGAGGAAACCATTTAACAAGTCACATGAAGAATCGGCATACTAGAGAAATCATCATGAAGAAGTGTGGGTTATGTTCGTATAAAACGGTGTCCCAAGTGCTAATCGAAAAACATTGTAATATACATTCAAAGGTTCCCGAGCATTTTTTCCTGTGTTCCATTTGTGGTTCTGGCTTTTTGAGTACAAAACTACTTCGAGGGCATATGGAAAGGTCCCATTCGAACGAGGAAGAATTCGTCGATTCAAATGATGAAGTAAACGTCAAAGATGAACTCGAATATGTTGCAAATGAGGATGAGGGATATTCAATTGAGTTATGCAAAGTCGAGATAGAAGACGATGAAGATGTTTCGGAAGACGAAGAAATGGAAACTATGTATTGCTGTCAATTTCCACAGTGTCAATTCCGAAGTAGAAGTGAGAGGGATGCGAAGATCCACAAAGCAATCAGTCATAACAGGAGAGGAGACGACAATCGTTGTCCCGAATGTACGTTTCATACAACATCGAGGTATCTTTACTTGGATCATCTGAAAGTGCACAAAATTGATATCGAGCACTTGAAGCCTCATTTGTGTGATATTTGTGGCACAAGGTGGATTCGTCAAGGCGATTTAACAAGACATATGTCCGTACATTGGGGAGGTGACGCTGAGAAAAGGAAAAGAGCGACGGTTAAAGTTGAAaatcaaaattcggaaaagaaGTTGTTGGAGTGTACCCTGTGTTCTTACACGACTAGATTAAGACTATGTTTGTATAAACACATGCTGAAGCATGGCAAAGAACATCAGAGGAATTTTAATTCATTTGTAGGCGACGATGATTTATCTGCAGATATGTATGTTACTGATGAAATGGATGAAGATGAAACAGATTTTTTTGATagagcaatacaaaattttgatattGATTACATGATATAG
- Protein Sequence
- MDRNSELENEVIKVIIVNEDGTENEVDPKTLNCLKVEISHNDDGFDSIDEDGMSDENNDISQEDALLLENIKVEVIEDPVLEFGEYILSQNLEEYSEKEYFHQYIENEENNPSRKRKRGRPSILETNKKRNHVCDICGYSSYQKSHYRRHITIHSKPEGIRCSICRKEMQGKSELTDHMEDHRSTIDRDRFQCNLCSYSSKKLTNVSQHTEIHYKPEKIKFDCENCDFTTTNRTLFKKHLNVHGNSRSTKCPVCLVVFKTMAARRKHLLKYKNGPDPNKYQCPECSYRTTKFNNFKQHMVVHRNEYEIEMFQCSYCPFKSKRKTDLRQHVIVKHKTDEEVLLFKCDFCSYESRRGNHLTSHMKNRHTREIIMKKCGLCSYKTVSQVLIEKHCNIHSKVPEHFFLCSICGSGFLSTKLLRGHMERSHSNEEEFVDSNDEVNVKDELEYVANEDEGYSIELCKVEIEDDEDVSEDEEMETMYCCQFPQCQFRSRSERDAKIHKAISHNRRGDDNRCPECTFHTTSRYLYLDHLKVHKIDIEHLKPHLCDICGTRWIRQGDLTRHMSVHWGGDAEKRKRATVKVENQNSEKKLLECTLCSYTTRLRLCLYKHMLKHGKEHQRNFNSFVGDDDLSADMYVTDEMDEDETDFFDRAIQNFDIDYMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -