Basic Information

Insect: Aphidecta obliterata
Gene Symbol: ci
Assembly: GCA_963966015.1
Location: OZ014428.1:9361341-9381473[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00031 0.033 15.1 0.1 4 23 343 365 341 365 0.89

2 5 0.13 14 6.9 0.1 3 23 375 400 373 400 0.79

3 5 0.00018 0.019 15.9 2.0 1 23 406 430 406 430 0.97

4 5 0.00029 0.03 15.3 0.4 1 23 436 461 436 461 0.97

5 5 6.7e-06 0.00071 20.4 0.3 1 23 467 492 467 492 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00031	0.033	15.1	0.1	4	23	343	365	341	365	0.89
2	5	0.13	14	6.9	0.1	3	23	375	400	373	400	0.79
3	5	0.00018	0.019	15.9	2.0	1	23	406	430	406	430	0.97
4	5	0.00029	0.03	15.3	0.4	1	23	436	461	436	461	0.97
5	5	6.7e-06	0.00071	20.4	0.3	1	23	467	492	467	492	0.97

Sequence Information

Coding Sequence: ATGACGGCCAGTCCAGTCGAGTCACAAATTCCAGCTGTAATTTCGTCCAGCATCACTGACCGAAGTGCTAAGGCTGCTAATAGCGAGAAGTTATATAACGTCGTCAGCAGGTGTCTTGAACTTCGAAAGGTACCATTCAGGAGTGAAATATGGCTTTGGTTCATCGTTCGCACCTATGGTGTAGGAAGCTTAACGTTTAAACGGGGCTTAAGGAAGGATATGAGGGAATCGAGagtaAGCGGAGGTCCAGGAGGTGGATTTCAACTTCTTGGACGGGAATTCCACCCTGCCTACCGCCTGCCACCCCATATGGAGTATCTTTATTCACTCCAGCATTCTACCGCCAATTCTATCCATGGATTAGGATTGTCGTCCGAATACCTCAGTACGAGGGGCCTTACCGAACTTCACCCATCTTCCACCCTTACTAGTGCCGAATTTCCTTTTAGTATAGATGGATCAAGACTGAATAGCCCACGACCAGGAAGTATAAGGCAATCAAGAAAAAGAGCGCTGTCTTCTTCTCCCTACTCCGATTCCTTTGACATAAATTCTATGATAAGGTTCTCCCCGAATTCCTTGGCATCTATTGTAAATGGCTCCAGGTCTTCCAGCGCCAGCGGTTCATATGGCCATCTATCAGCCGGAGCGCTTAGTCCAGCGCTCAGCATGAACCACGGCATGCATCTTCAGCAGATACAGGCGCATCTGATGAGGAGCGGGGGGTCGTTGTTACCCCTTGCTCCTACGGCTCCACCACCACATCCTATGTATTCCTTGGGACATCATCCCCTGCATATAACCTCCTCCCATAATAATTCGAAGACTGATCTCATAGACCATCGGAAGAAGTCGGACACGAGCACGTTAACACAAGTTGATGTGGAATCTCTATCAGCTGTTAGAAAAGTGAAGGTCAAAAAAGAACCTTCCAATGGAGGTCTACAATGTGGATCGTCAGCAGATGCTACCAATGATCAAATGGACCTGAAAGATGAACCAGGCGATTTCATTGAAACTAATTGTTATTGGAAAGACTGTGGTATCGAATTTTCAACTCAGGATGAACTAGTTAAGCACATAAATAATGGACATATACATGCTAACAAGAAGTCTTTTGTTTGCCGATGGGATGGATGTTCCAGAGCAGAAAAGCCATTCAAAGCTCAGTACATGTTGGTTGTTCATATGAGAAGGCACACCGGCGAAAAACCACATAAATGTACATTTGAAGGCTGTGTGAAGGCTTACTCTAGattagaaaatttgaaaacgcATCTTCGATCTCATACTGGAGAAAAACCATATACTTGCGAATATCCTGGATGTTCAAAAGCATTCAGTAATGCATCAGATCGTGCGAAGCATCAAAACCGTACCCACAGTAATGAGaaaccaTATGTTTGTAAGGCACCTGGTTGTACAAAACGTTATACAGACCCTAGTTCTCTAAGGAAACACGTCAAAACAGTTCACGGAGCTGAGTTCTATGCTAACAAGAAGCATAAGGGAATAGATGGTGGATCAGATGATGGTCCGGCTGGTCTTGATTCCAGTCCTCGAAGTGAAGATATGCAAAGTCACAAAACGGCTAGTCTCAGTAGTCCGAGCATCAAATCTGAGTCTGATGTCAATTCACCTGGGCAACAACAAGGAAGTCCACTTGGAATAACGCAGCTAGCTGGCAACTGTAATGATGATTTCTCAAATGATGTATCATCAGGAATGCAGAGATCCTCGGGTGCCATGGATGATCCATCTTGGCCTTACGAGGCCGAAGATCTAGAGATTGATGATCTTCCTGTTATTCTACGTGCAATGGTGGGCATAGGTTCCGAAAGAGGAGGCGGTGGAGGAGTCGCAGTAAGTGAAAGACCAAGGACAAGATTGAAACCAAGGATACAGATCAAACCACCGCTATCTCCAATGCTACCTCCCCAAAGAAAGAATATCGGTATCACTGATTTGAATAAGAGAATAACAGACTTGAAGATGGAAAATGGCGTGAACCCGCAGATTCAACCCAAATCTCCGATGACGGATCTTCAGCATAGGATCCAGCTCAATAATACTCAAGTGCAGATAAGGCGAGACAGTAATTCAACTGTTAGTTCTTATTATGGTAGTATGCGAAGTGCAGATATGAGCAGAAAAAGTAGTCTAGCTTCTCAAGGTTCCAGTTTGAGGCCAGGAATTGGTCCTAGTTCCTTCTATGACCCAATATCAGCAGGAACTTCAAGAAGGTCTAGCCAACTTTCAACTAACACAAATGGTGGTAGTTGTTTACCACCTCCTCCTCCATCTCAGCTGCTTGCTGGTCAGTTGCAAAGACTGCAGAATTCTTGCAACAAACTTACGAATAACTTAGTGCTTCAGACTCAAAGTGCATCACTTCAACAAACAGCTGCTCAACAAACCTGGTTGAATAACTTGGAAACTTTAACAAGCTCAAAGACAACTGTCAGCACAGAAGGAGGTAGAAGAATGTCTGAACCTTGTCATACAATAAGTGATCGAAGGAGCCCCCCACCAAGGCCGGCATCTGTGACATTGTCGCCACTGAAAGGTTCCACAAGCCTAACAGACCTGCATCCCAACCAAGCAGTGAATTTGGATGAAGTAGGAGAAAGTGAAATGGTTGAGAACAAACTTGTCATCCCAGATGAGATGGTACATTACCTGAATCAAGTTGCTGATACACAAAACGGATCTGATTTCAACCCATCTATGAGTTGGAGTGAAACAGTCCAAAAACCACTTCCAAGTCCTAGTCAGATCTTACCTTCACCAGCAAGTTTGAATCAAATTATGCCGTCGCCACAAAATACTAATCTGATGTCACCACAAGGCGTGGGCCAAGTTATGCCTTCACCAGGAGGTCTGAATCAAATGATTTCTTCTCCAGGAAATTCTAACTTGAACCAAATGTTACCATCGCCTTCATCTAATGTAAATCATATGATTAACTCGCCCAATATGAATCAAGTGATGCCTTCTCCTGGTTCTAATATGAATCAGATGATTGCATCTCCATTGTCAAATTTGAACCAAATGGCTTCCCCAATGTCCAATTTGAATCAGATGGTAGCCTCTCCCATGTCAAATTTGAGTCAGATGGTTGGATCTCCTCAGAATATTAACCAAGTTCCAGCTTCTCCAGGATATAATAGTATTCAGAATCCATTAATGTCTCCCATTTCAAACGTAAGTCAAATGGTTATGTCCCCATCTGGAATGGTACCATCGCCGATGAGGTGTCCTCCTCAGGCAATATTGTCACCTAACCATCATATGAATCAGATAACCGCACCTCAATCAATGATGGGTAGGCCGCAACAAATGATACCCCAAAATATGCCAAGTAATGGAGAGCAACTTATGAATATGAATTATTGTTACAACCAGGGAATGGCAAACCATAATATATGTTATAATATGCAGCATAGACAAGGTAATCCTTGGAATAATCAAACTGGGCAAAGTGTACAAAGTCAAATGTGTCATACAAACATTTCCCACCAAAACAATCATCACAACATGTGTTCCCAATTTACGAATCAGTGCCAACCTCAAACTCATgcatcaaataatttcaatatgtGTAACCAAAATTACATGCAAAACAAGTGCCAGAATGAAGCATCTAACAACTTCGCCTGCAATGGTAATGCGAGCATATATCAATTCAGGGGTCCAAACTACCACAATTGCAATACAAATATTAACAAACCCCTAACCCCTCATGCCATGGGAACTCCTGCTCCAACTGAACTTTCATATCAAACACAAAGTTTTGGAGAAAGGTCGAAATGTCATCATTCCCAAAATTGTTACCAACAGCCAGTGTATAACAATATGTGTGTGTCGCATTCTCAACATATGATGCCCCAAACTCAAATGTGCACAAACTGTAACTGTCAAAGACAGCAGAACTACCCACAAAAATGTCTAGATAGTGCGCTTAACAATAGTGAAATACAGTGCAAAGACATAAGTCAGTCCCAAATGTCACCTGGTTTACTTAACCAAAACCAACCAAAAGAAACACAGAACACTAATATGAACTCTACTAGGAGTGCTAATAATGCTATCCAACCCATTGGTATGCGTCAAGATACATATCAGAGGACTCTAGAATATGTTCAAAATTGCCAATCATGGGTCGGTAATTCTGACGTTGTTACAAGTAGTACTCATCCTTTAGCGAAAATCAAAGGGGAAGATGCTTGTTCCAACATGGTAGTTAATGATATGACATCGTCCCTCAGTTCTCTCTTGGAGGAGAATAGATATTTACAAATGATTCAATAA
Protein Sequence: MTASPVESQIPAVISSSITDRSAKAANSEKLYNVVSRCLELRKVPFRSEIWLWFIVRTYGVGSLTFKRGLRKDMRESRVSGGPGGGFQLLGREFHPAYRLPPHMEYLYSLQHSTANSIHGLGLSSEYLSTRGLTELHPSSTLTSAEFPFSIDGSRLNSPRPGSIRQSRKRALSSSPYSDSFDINSMIRFSPNSLASIVNGSRSSSASGSYGHLSAGALSPALSMNHGMHLQQIQAHLMRSGGSLLPLAPTAPPPHPMYSLGHHPLHITSSHNNSKTDLIDHRKKSDTSTLTQVDVESLSAVRKVKVKKEPSNGGLQCGSSADATNDQMDLKDEPGDFIETNCYWKDCGIEFSTQDELVKHINNGHIHANKKSFVCRWDGCSRAEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCVKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGIDGGSDDGPAGLDSSPRSEDMQSHKTASLSSPSIKSESDVNSPGQQQGSPLGITQLAGNCNDDFSNDVSSGMQRSSGAMDDPSWPYEAEDLEIDDLPVILRAMVGIGSERGGGGGVAVSERPRTRLKPRIQIKPPLSPMLPPQRKNIGITDLNKRITDLKMENGVNPQIQPKSPMTDLQHRIQLNNTQVQIRRDSNSTVSSYYGSMRSADMSRKSSLASQGSSLRPGIGPSSFYDPISAGTSRRSSQLSTNTNGGSCLPPPPPSQLLAGQLQRLQNSCNKLTNNLVLQTQSASLQQTAAQQTWLNNLETLTSSKTTVSTEGGRRMSEPCHTISDRRSPPPRPASVTLSPLKGSTSLTDLHPNQAVNLDEVGESEMVENKLVIPDEMVHYLNQVADTQNGSDFNPSMSWSETVQKPLPSPSQILPSPASLNQIMPSPQNTNLMSPQGVGQVMPSPGGLNQMISSPGNSNLNQMLPSPSSNVNHMINSPNMNQVMPSPGSNMNQMIASPLSNLNQMASPMSNLNQMVASPMSNLSQMVGSPQNINQVPASPGYNSIQNPLMSPISNVSQMVMSPSGMVPSPMRCPPQAILSPNHHMNQITAPQSMMGRPQQMIPQNMPSNGEQLMNMNYCYNQGMANHNICYNMQHRQGNPWNNQTGQSVQSQMCHTNISHQNNHHNMCSQFTNQCQPQTHASNNFNMCNQNYMQNKCQNEASNNFACNGNASIYQFRGPNYHNCNTNINKPLTPHAMGTPAPTELSYQTQSFGERSKCHHSQNCYQQPVYNNMCVSHSQHMMPQTQMCTNCNCQRQQNYPQKCLDSALNNSEIQCKDISQSQMSPGLLNQNQPKETQNTNMNSTRSANNAIQPIGMRQDTYQRTLEYVQNCQSWVGNSDVVTSSTHPLAKIKGEDACSNMVVNDMTSSLSSLLEENRYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00020856;
90% Identity: -
80% Identity: -