Aobl019029.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014434.1:1731877-1735222[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.34 36 5.6 1.4 1 23 194 217 194 217 0.94 2 21 0.0032 0.33 12.0 2.5 1 23 223 246 223 246 0.96 3 21 0.14 15 6.8 2.6 1 23 252 275 252 275 0.90 4 21 0.14 14 6.8 5.3 1 23 281 304 281 304 0.95 5 21 0.0056 0.59 11.2 1.1 1 23 310 333 310 333 0.96 6 21 0.14 15 6.8 4.1 1 23 339 362 339 362 0.92 7 21 0.0014 0.15 13.1 2.3 1 23 368 391 368 391 0.96 8 21 0.00059 0.062 14.3 4.1 1 23 397 420 397 420 0.96 9 21 0.0079 0.83 10.7 0.7 2 23 427 449 426 449 0.94 10 21 0.0055 0.58 11.2 1.7 1 23 466 489 466 489 0.96 11 21 0.13 14 6.9 4.5 1 23 495 518 495 518 0.95 12 21 0.0035 0.37 11.8 2.9 1 23 524 547 524 547 0.96 13 21 0.083 8.7 7.5 4.5 1 23 553 576 553 576 0.95 14 21 0.0031 0.32 12.0 0.5 1 23 582 605 582 605 0.95 15 21 0.031 3.3 8.9 7.2 1 23 611 634 611 634 0.95 16 21 0.001 0.11 13.5 0.7 1 23 640 663 640 663 0.96 17 21 0.0015 0.16 13.0 3.1 1 23 669 692 669 692 0.95 18 21 1.6 1.7e+02 3.5 0.5 1 20 698 717 698 718 0.95 19 21 0.027 2.9 9.0 0.6 2 23 728 750 728 750 0.96 20 21 0.00053 0.055 14.4 0.3 1 20 757 776 757 777 0.97 21 21 0.036 3.8 8.7 2.2 1 23 786 809 786 809 0.95
Sequence Information
- Coding Sequence
- ATGGAAGGTGATCCTTTTACGGATAATGCAGGGCAAAGCATGGATGAAGAACCTGCAATATCTTCAAATGAATATTGGTCAAACGATGAAATGGTTGAAATGAAGACGGTGGATATCATCGAACATTTCGTGGATGAGAATGGAATTTACGATAGGAATATATATTTAGAAGAAATGGAAGATTTGAAGTTCGTTATCGGATCTGGAAGAACTGATGCAGAGATGGGCTATATCCCAACGATGATGATAAAATCTGATCAACAAGATATGGATACCGGCAGATATGATCCAAATGAAGAGATGACATCTTTTGATTCGAGAAATTTCAAGGATGATTCACAAGAATATAGctttgaaaattatgaagaagtaAGGATGAAAACGGAACCCTTGGATATTACGGAACAGTTCGAGGATGAAAATGGACTTCATGGAGGAGAggtggaaaatttcaatattggaTCTATCAAAACTGAGATACAAGAAGTACATAACGAAGAGAATTCGATAAGTTCCAGGGATATTGAACCGGAAAATAGCTCAGTCCTCGATAATAATTCCAATTTCGATTCAACGAGACATAAGTGTCAAATGTGTGATTTCACAGCGAAATGGAAGAGTAAACTCAAAATCCACGTGGATAGCGTCCATTTGAACCTGAAAGAACACAAATGCCAATCGTGCGATTTCACAGCGAACCTGAAGAGCAACCTAAAAAAACACATGGATTCCGTCCATCTGAATCTTAAACAACATAAGTGTAACTTATGCGACTACGCTTCTTACAAGAAAACCCACGTGAAAAACCACGTGGACGCCATCCATTCGAACCTGAAGAAACACAAATGTCACCTATGCGATTACGCGACGAACTCCGAGAATTGCCTGAAGAGTCACGTAACCTCCATCCATTTAGATCTGAAACAACACAAGTGCGACATGTGCGAGTACGCAGCGAACAACAAGAGATACCTGAAAAGTCACATCGATTCGgtccatttgaatctgaagcaacataagtgtcatttgtGCGACTATGCCACCCACATCAAGGGCCACCTCAAGGATCACATAGACGCGATCCATTTGAATCTGAGGAAACACGAGTGCCACTTGTGTGATTTTTCGGGGAAGATGAAATCGGCCCTGAAAAAACACATAGAGTCCGTTCATATAAACCTGAAACAACATAAATGTCATTTATGCGACTTCGCATCGAACAACAAGAGCAATCTGACGAGTCACATCGATTCCTTTCATTTGAATCCGAGACAACTTAAGTGTCAGTTGTGTGATTTCCAAGCAAATTCGAAAGGTCATCTAGAAAATCATATCAAAGGGATTCATTCAAATTTGGAAGAACATGTAGATTCTTTCCATTTGAACCCAGAAGTACACAAGTGTCAATTGTGTGATTTCTCGACCGATTCGAAAGTTACCTTGAAAGACCACATAGATTCTTCCCATCCCGATCCGAAGAaatacaagtgtcacttatgtgattatgacACGAACTTCAAGAATTGCCTAAACAGTCACGTAGACTCCATCCATCTAGATCTGAAACAGCATAAATGCCACTTGTGCGACTACGCAGCCAACAACAAGAGATACCTGAAAAGTCACATCGATTCGGTGCATTTGAACCTGAAACAACATAGGTGCGACTTGTGCGATTATGCTACTAACATCAAATGCCACCTCAAAAACCACATAGACTCCATCCACTTAAATTTAAGACAACACGATTGCAACATGTGCGATTTTTCTGCGAAGATGAAATCCGCTTTGAAAGCGCACGTGGAGACCGTTCATTTAAACCTGAAACAACACAAGTGTCAACTATGCGAGTACAATACAAACAACAAAGGCAACCTGAAAAGTCACATGCATCACAACCATTTCAACCAGAAACAACACAAGTGCCCGCTGTGCGATTTCACCTCAAATCTAAAAGGTTCCCTAAAGAAACACATCGATGTTGCCCATTCCGATTCGAAGGAGCACAAGTGTCACCTATGCGACTATTCTACGAACATCAAGAGCTACCTGAAGAATCACATAGATATCGTTCATTTGAACtcgaaggaacacaagtgtcgcCTATGTGAATTCGCATCAAACAGCGAGGAACGGCTGAAAACTCATATAGAGTGTGTCCATTCGAATCTGAGGAAGCGTAAGTGTCCGATGTGTAACTTTACTGCGAATTTGGAGAGTAATATCAAGAAACATATGGAGTCCAATCATTCGGGTGTGAAAAAGGAGTACAAGTGTGGACAATGCGGATTTTCTTCGAACAACGAGTATAATCTTAAGACTCATATCGAATGTGTTCATTCGAATCTGAAGCAGCATAAGTGTCAGTTGTGTAAGTTTACTGCGAATTTGGAGAGTAATCTCAAGAAACATTTGGATTCGGATCATTCGAATTTGAGGAAAATTACGGTCACCATGTGA
- Protein Sequence
- MEGDPFTDNAGQSMDEEPAISSNEYWSNDEMVEMKTVDIIEHFVDENGIYDRNIYLEEMEDLKFVIGSGRTDAEMGYIPTMMIKSDQQDMDTGRYDPNEEMTSFDSRNFKDDSQEYSFENYEEVRMKTEPLDITEQFEDENGLHGGEVENFNIGSIKTEIQEVHNEENSISSRDIEPENSSVLDNNSNFDSTRHKCQMCDFTAKWKSKLKIHVDSVHLNLKEHKCQSCDFTANLKSNLKKHMDSVHLNLKQHKCNLCDYASYKKTHVKNHVDAIHSNLKKHKCHLCDYATNSENCLKSHVTSIHLDLKQHKCDMCEYAANNKRYLKSHIDSVHLNLKQHKCHLCDYATHIKGHLKDHIDAIHLNLRKHECHLCDFSGKMKSALKKHIESVHINLKQHKCHLCDFASNNKSNLTSHIDSFHLNPRQLKCQLCDFQANSKGHLENHIKGIHSNLEEHVDSFHLNPEVHKCQLCDFSTDSKVTLKDHIDSSHPDPKKYKCHLCDYDTNFKNCLNSHVDSIHLDLKQHKCHLCDYAANNKRYLKSHIDSVHLNLKQHRCDLCDYATNIKCHLKNHIDSIHLNLRQHDCNMCDFSAKMKSALKAHVETVHLNLKQHKCQLCEYNTNNKGNLKSHMHHNHFNQKQHKCPLCDFTSNLKGSLKKHIDVAHSDSKEHKCHLCDYSTNIKSYLKNHIDIVHLNSKEHKCRLCEFASNSEERLKTHIECVHSNLRKRKCPMCNFTANLESNIKKHMESNHSGVKKEYKCGQCGFSSNNEYNLKTHIECVHSNLKQHKCQLCKFTANLESNLKKHLDSDHSNLRKITVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -