Aobl005631.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidecta obliterata
Gene Symbol
-
Assembly
GCA_963966015.1
Location
OZ014428.1:29037651-29047056[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.011 1.2 10.2 0.5 2 23 45 66 44 66 0.93
2 16 0.081 8.5 7.6 0.1 2 19 181 198 180 199 0.95
3 16 0.00012 0.013 16.4 0.6 1 23 209 231 209 231 0.98
4 16 0.046 4.8 8.3 7.1 1 23 251 274 251 274 0.97
5 16 2.1 2.2e+02 3.1 0.2 2 23 417 438 416 438 0.93
6 16 0.0007 0.074 14.1 1.0 1 20 461 480 461 481 0.95
7 16 0.17 18 6.6 0.2 1 16 492 507 492 509 0.87
8 16 1.5e-05 0.0016 19.3 1.1 1 23 613 635 613 635 0.97
9 16 2.8 3e+02 2.7 1.5 1 23 639 661 639 661 0.93
10 16 0.098 10 7.3 2.1 1 23 696 718 696 718 0.93
11 16 0.014 1.4 10.0 3.7 1 23 724 747 724 747 0.96
12 16 0.0015 0.16 13.0 4.0 1 23 758 780 758 780 0.97
13 16 0.00066 0.07 14.1 0.8 3 23 787 807 786 807 0.98
14 16 0.00016 0.017 16.0 1.7 1 23 813 835 813 835 0.97
15 16 3.3e-07 3.4e-05 24.5 4.6 1 23 841 863 841 863 0.99
16 16 0.0034 0.36 11.9 0.1 1 21 869 889 869 890 0.95

Sequence Information

Coding Sequence
ATGATTGTACGGTTAAGTGGGGGTATTCCTTCACAAAAAGTAAAGCCATGTCGGATCGTTTTGAACAACATACAAGGACTCCTGGACGAAAATGGCGTATATATAGTACCAGGAAGAAGCAGAAAGAACCTAACGTGTTACAGATGTTTCAAGAAATTCGACTCTGCCGAATCTTTGGAAGTGCACAAGGCCGAACACGAACCGGAGAGCGAAGAGGAGAATGTCTTCGTGGCTAGCGACAGTGAGATCGAGATCGAAATAGAGAGCGATTCGGAGGAGGAAAAAGGAGTTGAAGTCGTAGAGCAAGTAGATGCGAAACCTCTAAATAAAATTAGCGAACGTGTAGCGTCGCCGAACAGGAATGTAGTCCAGCCGGCTGTCATTGAATACGTTCCAAAGCCGGATACTCTAATGCCAAAGCAGGTTCAAGTCGTGGAGCCCATAAGGGCCCAGGGCAATCAAATTGCGAACGTGGCGCAGCAGTCTTCACCTGCGAAAGTCGAAGGCAAAAAAGTGCCTGTATTGTGTAATATCCAGATACGATGTTTAACGTGCGATGTTCTGTTCACCAACAGTGAACTCCTGATGAAGCACAGTCCTTTGAGTCAAGATAAACCTTGCTGCTTCACGTGTAAGGTCTGTTCGCAGAGTTATACGCAACCAGAAGATTATCTCAGTCATATAATGCAACATAACACATTCTCGTCTTCTCGCTACGGATATAGAGGAGGTAATAGAAAGAAACCGGAGTTTCGATGCACTTATTGCCGCCAAGAGTTCGAACATCGTTTCATGCTGACCCAACACGAACATACCTACCACAAGAACGAGTTGAACGCATCGAAGGCGCCGACACCTCTTGTGGTGACCCAAAGTACGACTAATTCAAAAGTGGACATACCAATTCAGCCACCGCCGAAACCAATTGTTGAAGTGATGATACCAACTGTGGAAGAAACGAAGCAGGACGCTACGGAATCAAAAGTTGAGGACTCTGAAACTCCAAAACCAAAAATTTGGGTTATAAAAGAAGCCCTGATGAAATCGCCCGAACCTCCAGCCACCCTAGAACCAAAACCGGCGATGGCAACAGTAACAGGCCCTTCTGGAGTCAAGAGGAAACTCGAAGAAATCCAAATGCTCGAAGAACTGATGAAACCCTCGAAAAGAGGCAGGCCAAGTAAAGCTGATTCGAGTAAAACGCCTCCAACAACTTTGCCGGTCGTTACACCGACGGCGACGAGTTTGACATGCGATATTTGTTTCgatattttccaaaataaaacCGCTTACGATGAGCACATGGTTTATCACAAAGAAAGCAAGAAACTCGAAGAAACCTCTCCAGCTGTATTGAAAAAGGTGGAAACCATCGAGATCCATCCATGTCCTATCTGCAACTTGCACTTCAAATCTTTCGCTGGCCTGAGGAGGCACCAGACCTGCGCTCATGAGAATAAAAAGCTGACCAGTTTCGTATGTGTCAAATGCTCGAAGATATTCTCCTCTCGAAAAGTCCTTCAAATAACTAACACTAGTCATTCCAGGTTTCTTCCCGATGTCTTGATACCAATAGTCCAATTGAAGGAGGAAAGAGACGAAGACAGAGAAGCGATACCAAAGAGAAAATACGCCAGGAAATCCAGTTCGTCGGACAAAACCCCCAAAATCCGAGTGAAAGCCGAATTCCGGATGCAATTGGACGACGAAGACGAAAAGTTCGACTGCCCCATATGCAAGAATGACATCAAAAGAAGCCTCAAGGAAATGAAGGCGCATTACAAGGCTGACCACAAGGGAAAAAGGCTGCGAACCGGAATCCTCACCAACGAGTCGCACCCTTGCGAAATATGCGGGAGAGAACTGAAACATAAAAGCGCACTAAAAGAGCACATCGAAACCCACAACAACAGCTACAGCTGCGAGCAGTGCGGCGTCAACCACAAGAAACCCGCGGACCACGTGATACACATGAGGTCGCACTCCGAGGAAGGTCTTTTCTGCTGCATCTTCTGCGATTACAACACCACGGAACTGCTTGAAATCCAGAAACATATGAGCGGGGACCACGAACGGACCCAAAAGTACCACTGCAAGATCTGCAACAAGGGCTTCCAGATATTCAGTTGGTTCGTCGAACACGAGAACTACCACACGGGCTTGAAGCCGTTTAGCTGCGAATTCTGCGGGAAATGTTTCCTGTACTCGCGATACCTGTCGGCCCATCGGAGCAGCATGCACAAGGAGGAACTCACAGGGGTGCCGAACATCCACGAGTGCGTCATATGCAAGAAACAGTACCAACACAAGAACAGTCTGAATCTCCACATGAACATTCACACGGGCAACGTGGCGATTTGTGATATTTGCGGGAAGATTTTGTCCAGCAAGGAAAAGTTGAAGTTCCACCAGAGGACGCACACCGGCTACAAACCCTTCAGTTGCTCCTATTGCGGGAAATGCTTCACCAAGAAGCCCATACTAGTCGAACACGTTCGGATCCACACGGGGGAACGACCTTACGTCTGCGAGTACTGTCataaatgtttctcgcaaaggTCCAGTCTTGTTATTCACATCAGGTCACATACAGGGGAAAGGCCATACGTGTGCCAGTTCTGCCAGAAGGGATTCGTGGCCAAGGCTATGCTCAATATCCATTTGAAATCTTGCAAAGGGGTCCCGATGAACTGA
Protein Sequence
MIVRLSGGIPSQKVKPCRIVLNNIQGLLDENGVYIVPGRSRKNLTCYRCFKKFDSAESLEVHKAEHEPESEEENVFVASDSEIEIEIESDSEEEKGVEVVEQVDAKPLNKISERVASPNRNVVQPAVIEYVPKPDTLMPKQVQVVEPIRAQGNQIANVAQQSSPAKVEGKKVPVLCNIQIRCLTCDVLFTNSELLMKHSPLSQDKPCCFTCKVCSQSYTQPEDYLSHIMQHNTFSSSRYGYRGGNRKKPEFRCTYCRQEFEHRFMLTQHEHTYHKNELNASKAPTPLVVTQSTTNSKVDIPIQPPPKPIVEVMIPTVEETKQDATESKVEDSETPKPKIWVIKEALMKSPEPPATLEPKPAMATVTGPSGVKRKLEEIQMLEELMKPSKRGRPSKADSSKTPPTTLPVVTPTATSLTCDICFDIFQNKTAYDEHMVYHKESKKLEETSPAVLKKVETIEIHPCPICNLHFKSFAGLRRHQTCAHENKKLTSFVCVKCSKIFSSRKVLQITNTSHSRFLPDVLIPIVQLKEERDEDREAIPKRKYARKSSSSDKTPKIRVKAEFRMQLDDEDEKFDCPICKNDIKRSLKEMKAHYKADHKGKRLRTGILTNESHPCEICGRELKHKSALKEHIETHNNSYSCEQCGVNHKKPADHVIHMRSHSEEGLFCCIFCDYNTTELLEIQKHMSGDHERTQKYHCKICNKGFQIFSWFVEHENYHTGLKPFSCEFCGKCFLYSRYLSAHRSSMHKEELTGVPNIHECVICKKQYQHKNSLNLHMNIHTGNVAICDICGKILSSKEKLKFHQRTHTGYKPFSCSYCGKCFTKKPILVEHVRIHTGERPYVCEYCHKCFSQRSSLVIHIRSHTGERPYVCQFCQKGFVAKAMLNIHLKSCKGVPMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-