Basic Information

Insect: Aphidecta obliterata
Gene Symbol: -
Assembly: GCA_963966015.1
Location: OZ014434.1:3883720-3885893[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0013 0.14 13.2 4.1 1 23 150 173 150 173 0.97

2 16 1.9 2e+02 3.3 2.9 1 23 179 202 179 202 0.94

3 16 0.0015 0.16 13.0 1.5 1 23 208 231 208 231 0.96

4 16 0.011 1.2 10.3 2.5 1 23 242 265 242 265 0.96

5 16 0.004 0.42 11.7 1.4 1 23 270 293 270 293 0.94

6 16 0.0013 0.14 13.2 0.6 1 23 299 322 299 322 0.96

7 16 0.0025 0.26 12.3 2.4 1 23 328 351 328 351 0.95

8 16 0.00045 0.048 14.6 1.1 1 23 357 380 357 380 0.96

9 16 0.0076 0.8 10.8 0.8 1 23 386 409 386 409 0.94

10 16 0.0016 0.17 12.9 1.2 2 23 416 438 415 438 0.94

11 16 0.0047 0.49 11.5 0.7 1 23 444 467 444 467 0.95

12 16 0.00061 0.064 14.2 1.9 1 22 473 494 473 496 0.90

13 16 0.0078 0.82 10.8 1.3 1 23 502 525 502 525 0.94

14 16 0.006 0.64 11.1 0.7 2 23 532 554 531 554 0.94

15 16 0.00065 0.068 14.2 0.4 1 23 560 583 560 583 0.96

16 16 0.00059 0.062 14.3 4.2 1 23 589 612 589 612 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0013	0.14	13.2	4.1	1	23	150	173	150	173	0.97
2	16	1.9	2e+02	3.3	2.9	1	23	179	202	179	202	0.94
3	16	0.0015	0.16	13.0	1.5	1	23	208	231	208	231	0.96
4	16	0.011	1.2	10.3	2.5	1	23	242	265	242	265	0.96
5	16	0.004	0.42	11.7	1.4	1	23	270	293	270	293	0.94
6	16	0.0013	0.14	13.2	0.6	1	23	299	322	299	322	0.96
7	16	0.0025	0.26	12.3	2.4	1	23	328	351	328	351	0.95
8	16	0.00045	0.048	14.6	1.1	1	23	357	380	357	380	0.96
9	16	0.0076	0.8	10.8	0.8	1	23	386	409	386	409	0.94
10	16	0.0016	0.17	12.9	1.2	2	23	416	438	415	438	0.94
11	16	0.0047	0.49	11.5	0.7	1	23	444	467	444	467	0.95
12	16	0.00061	0.064	14.2	1.9	1	22	473	494	473	496	0.90
13	16	0.0078	0.82	10.8	1.3	1	23	502	525	502	525	0.94
14	16	0.006	0.64	11.1	0.7	2	23	532	554	531	554	0.94
15	16	0.00065	0.068	14.2	0.4	1	23	560	583	560	583	0.96
16	16	0.00059	0.062	14.3	4.2	1	23	589	612	589	612	0.97

Sequence Information

Coding Sequence: ATGGATGAAAAGCCAGCAATATCTGCGGATGAATATTTGTCGAATGACGAAGGAGTTGAAATGAAGACGATGGACATTACCGAAACTTTTCTAGATGGGAATGGAATTTCTGACAGAGAAATATATTCAGATGAAATTGACGGTATCCAAATGGGGATGATAAAAACTGATCAACAAGAAATAGATGATTCAACTGAAGAGGGAGCATCCTATAGTTCGAGAAATTCCAAGGAGGAATCATGCGAATACAGCAGTGAGAACGATGAAAACGTTGGAATCAAGACCGAGCACTTCGACATTACGGAACAGTTCGTGGACGAGAATGGAATTCACGACAGAAACGTATATTTAGATTTGAAGTCTGACGAAACCGAAGGACaagaaataaattattcgaCCAATAACGAAgagaattcgataaatttcgaTGATTCGAAAGGGACGAAACATAAATGCCACAAATGTAGTTATTCATCGAACTCCGAGAGCTCCCTCGAAAGTCACCTAAATTCCGTCCATTCGTATTCgaggcaacataagtgtcaattGTGCGATTTCGCTTCAAAATGGAGAGGTGCACTGAAAAACCACGTACATTCCAAGCATTTGAATTTGagacaacataagtgtcacttgtgcgactaTGCCGCGAATGTCAAGGGTACTCTCAAAAAACACATAGAATCCGCTCATTTCGACCACATTCATGAATATGCGAAACGATACAAGTGCCACTTATGCGACTATGTTGCCCACAGAAAAAGCATGGTCAAACTTCATATAGATTCCGATCATTTGAATATCAAACATGAGTGTCATTTATGCGACTTTGTCTCCACCGCTAAAGGAAATCTTAAGAATCATGTCGACTCAGTTCATTCCGAAGTGAAACCATACAAGTGTGACTTGTGCGAATACGCTACCAAAAGGAAACAAAGCATGAAAGATCATATAGATTCCgtccatttgaatctgaaagaaCACGAGTGTCGCTTATGCGACTTTAAAACGAACACCTACGGTAACCTCAAACGACACATATACTCCATTCATTCGGATCTGAAACCGCACAAGTGTCCCTTGTGCGACTTTGCTACCAGCAGAAAACGGCAAGTTAAAATTCACATGGATTCCGTTCATTTCAACCTGAGACCGCACAAGTGCGACCTATGCAACTACGCCGCCATCAGTAAGACCAATCTGAAGTACCACGTGGACTCCGTTCATTCGAATGCGAAAGAAcaaaagtgtcacttatgcgaatATGCCGCCAACAGAAAGAGCACTCTCCAACGTCAcgtagattctgttcatttgaaccTGAAACGATTCGACTGTCACTTGTGCGATTACGCTTCGAAGAACAAATGGGACGTCAAGGACCACATAACTTCCGTTCATCTGAAGCTGAAACGACATAAATGTAACCTGTGCGACTTTGCCACCACCAGAAAGAGCTCTCTGAACACTCACGTGGATTTCATtcatttgaaactgaaaaagcacaagtgtcacttgtgcgactaTGCCGCGAACATCAAAAGTACCCTCCAGAATCACATAGATTTGGTCCATTTCAATCTGAAACGACtcaagtgtcatttatgtgagtACGGTACGAACTCTCCAGACCGTCTCAAACGTCACGTAGAATCTATCCATTTGAATCTGAGGCAACACAAGTGTCCGTTCTGCGACTATGCAGCGAACAACAAGTGGAGTCTGAGGGATCACATCGAATCGGTTCATTTGACTCCGAAacgacataagtgtcacctgtgTGGTTTCGCTTCGAACACCGAGGGTAATTTGAGAcgtcacaaaaaaaaagttcattccAATAATTCATGTGATTTACTACAAAAAACATAA
Protein Sequence: MDEKPAISADEYLSNDEGVEMKTMDITETFLDGNGISDREIYSDEIDGIQMGMIKTDQQEIDDSTEEGASYSSRNSKEESCEYSSENDENVGIKTEHFDITEQFVDENGIHDRNVYLDLKSDETEGQEINYSTNNEENSINFDDSKGTKHKCHKCSYSSNSESSLESHLNSVHSYSRQHKCQLCDFASKWRGALKNHVHSKHLNLRQHKCHLCDYAANVKGTLKKHIESAHFDHIHEYAKRYKCHLCDYVAHRKSMVKLHIDSDHLNIKHECHLCDFVSTAKGNLKNHVDSVHSEVKPYKCDLCEYATKRKQSMKDHIDSVHLNLKEHECRLCDFKTNTYGNLKRHIYSIHSDLKPHKCPLCDFATSRKRQVKIHMDSVHFNLRPHKCDLCNYAAISKTNLKYHVDSVHSNAKEQKCHLCEYAANRKSTLQRHVDSVHLNLKRFDCHLCDYASKNKWDVKDHITSVHLKLKRHKCNLCDFATTRKSSLNTHVDFIHLKLKKHKCHLCDYAANIKSTLQNHIDLVHFNLKRLKCHLCEYGTNSPDRLKRHVESIHLNLRQHKCPFCDYAANNKWSLRDHIESVHLTPKRHKCHLCGFASNTEGNLRRHKKKVHSNNSCDLLQKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -