Aobl021158.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- Zfpm1
- Assembly
- GCA_963966015.1
- Location
- OZ014435.1:397398-408704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5 2.6e+02 2.9 0.1 2 23 6 27 6 27 0.91 2 15 3 3.2e+02 2.6 4.7 1 23 453 476 453 476 0.91 3 15 0.18 19 6.5 0.3 2 23 540 562 539 562 0.93 4 15 0.00012 0.013 16.4 0.4 2 23 571 592 570 592 0.97 5 15 7.9e-05 0.0083 17.0 1.6 2 23 595 616 594 616 0.97 6 15 0.0031 0.33 12.0 0.6 1 23 622 644 622 644 0.98 7 15 2.5e-05 0.0026 18.6 5.7 2 23 651 672 650 673 0.95 8 15 0.64 68 4.7 3.2 5 23 686 704 683 704 0.96 9 15 1.6e-05 0.0017 19.2 2.8 3 23 711 732 710 732 0.97 10 15 0.0013 0.13 13.3 0.1 2 23 748 768 747 768 0.98 11 15 0.0002 0.021 15.8 1.1 1 20 774 793 774 796 0.92 12 15 0.00011 0.012 16.5 0.3 1 23 804 826 804 826 0.99 13 15 0.00034 0.036 15.0 4.0 1 23 832 854 832 854 0.98 14 15 7.1e-07 7.4e-05 23.5 3.4 1 23 860 882 860 882 0.98 15 15 0.00074 0.078 14.0 7.2 1 23 888 910 888 911 0.96
Sequence Information
- Coding Sequence
- ATGGAATCTGGCCCGGTTTGCCCCGTGTGCACCCTCTATCTGAGACCCGGCATCACCTTGAAATCTCACCTGACCACCCACCCCAAGCAGAAAGTCATAGAAGCCCTGGTAAAATTAACCGAGGTCGAGTCTCAGCCCGGAGAAAATAACACCGGACAAGAACTGTGTCAAACTACCCAGGAGCAACCTTTCAATTCGATCACTAACGCGCCATGGACGGGGGGAAACATCCCTGGCCCTTCTCAGGTGCAAACGCCTTTTCAAGGCAATCACGTCTTCATCTACCAACAGAGCATGAGCACGTCGCAAACGAACACCATCAATCCTCTTGCCCAACAATACATTATACCCGCTGTTTTGAACCCACAAACGATGCCGTACGTTTATCAACAACAGCAGGTGATAATGTCTAGCGGGTCTTGCTTACCTCAGATGCGCATCTCTCCTTTCGACCTAAACGGTGCTCCCCCTGTAGACCCCTCGACAACCGTGATCCAATCGCCACAAATAATCCAAGAAGAGGACGATAATTTGGTCGAAGAGACCAGGGAGATTGTCGATCTAGAAGAGTTGGACGAACACCCTGAGGTATCGATCAAGGACGACGAGATCGAAGAGGAACCTTGTTCGAGTAAAGATTCGGGGGTGGACTCGAAACTCCAGGAAGATAGTTTCGAGGAGTCCAAATTCGAAGATTCCATGGGGATGGAGGCCGAGGTACCCGAAAACGGCTGGGATCTGAACAAAGCGTGCCAAACCGCCTCGGCTTCCCAACAAATCGACGATTTCAACAAGAAAGACTGCTACTACTACGATAACGAAGCGGAGGGCAATTACGACCCCAACGTTCCGATGGAATCCCCTTACGAGCAACAGGATCCCATCTATACCGGCGCCAACATCTTGCAGTCCGCCGAAGACGTCGATTTCGAGGTGGACGGGGTTCCGGTGATAATCGGGGAGTTTGCCAACAGTTCAGTCATCTCGCAAGTGGATAATTTCGAGAATATAAGCGAGGGGAACGTTCTGATGACTATCGGAGAGAACGGGTTGGAGAATAACGTTAAAGAATCGTTCGGGACTGCTTTGGAGATGGAGGAGAGTATGTCGAGGGGGAGCACCCAGGTGAATATTCAGGCGGATGAGAGGATGCCTCCGAGGGGTGAACTATCCGGGCAGGAGAGTTTGGGGGGCGCCAGCGATATCAACTGGAATAGGCTGCATTATAACGAAgTGAGTTCCAGTGCCTCTTACGATCCTCTAGGCAGAGACGGATGGGAGGATTCCGATGTGGATTGTCCTCCGAACGAAGAAGATGTTCCATCCGTCATCGGTTACACACCACCAATCCTCAACTTCAAATGTTCCAGTTGCGACGAAGCGTTCTCGTGTCTTCAGGAGCGAAAGAGGCACATTCACGAGAAACACGACAAACAGAATACCAACACGATCGGTTCCCAGATCGGcaagaagaaaataaagaaactgaCGATTAAACCGAAGAGTGAAACTGAACCGAAATTCGACACGGTCTTCACCAACAAAATAAAGGTGGAGAACACCGAATGTAAGACGGAATTAGACGAGGTGAAGCCCGACGACGCGGATTCCAGAACCGTCTGCGACTTGTGTAACACCGTCCAGTCGGACCAGAAGTCGCTGAGGGAACATCGTGTTAAAGTGCACAAGATCCCGGACAAAGCCCGTTTGAAATGTTCAACTTGCGACGAGGTTTTCCCCAACGAATACAAATTCACCGAACACCTAAAAGTGCACCCTTTGGAATGTAAGATGTGCGGAAAGCTGTTCTACAGGAGACAGAACATCCAACTGCACATGAAGCGACACCTCGGTATCAAACCGTACAAGTGCGACGTCTGCGAGAAGGCCTTCCTGACCAAGCAGAAGTTGGACGAACATAGGAACGTCCACACAGGTCACGCTCCGATCAAGTGTAATCTTTGCAACGAGACTTTCCGGAGACATTCCAACCTGATCCAGCACCGAAACAGGCACCATCTGAAGCACAAGCGGAAACTGAAGGACTACGTTTGTCACTGCGGGGAGTATTTCCACTCCAGGAAGAAACTGGCGTGGCACAAAGAGACGCACGATACCAAGCCGAAAGCTTGTACTAAGTGCAACGAGAAATTCGTGCACATGTCAAGTCTAACTAGACATATGAGGAAGGCTCATAACGAGAGATTTCTACCGACCGAGGGAAGGAGCAACGAGAACGTTCAGTGTCCTGTGTGCAAGGGGGTGTTCGTGAAGTCCTCGTTGGACGTCCACATGCGCACCCACACCGGCGCCAAACCCTACTCGTGCCTCATCTGCAACAAGGACTTCAGCACCAGGTGGAACCTGAAGCTGCACAAGTGGACGCACGCCTCCAGGGTGTCGAAACCGTTCAAATGCGACCAGTGCAACGGCGCGTTCGTCAGGGAGTCCGACTACGTCTCTCACATGAACAGTCACAAGAGCATCAAGCCGTACACCTGCAACTATTGCGGGGCGAGGTTCATCCGCAAGTACAACTGTCAGCGACACGTGAAGGAGCACGAGAACGTCAAGACGTTCAGTTGCACCGTGTGCGGCAAGATGTTCCACCGGTCCTACTATCTGAAGGATCACATGAGGGTGCACAGCGGGGTGAGACCGTACACTTGTCACATTTGCGGGAAGACCTCGACCACGAAGTCGAACCATAACAAGCACGTTCAGATACATCATCCTAGGTCTCCTGTGACCACGGAAACTTAG
- Protein Sequence
- MESGPVCPVCTLYLRPGITLKSHLTTHPKQKVIEALVKLTEVESQPGENNTGQELCQTTQEQPFNSITNAPWTGGNIPGPSQVQTPFQGNHVFIYQQSMSTSQTNTINPLAQQYIIPAVLNPQTMPYVYQQQQVIMSSGSCLPQMRISPFDLNGAPPVDPSTTVIQSPQIIQEEDDNLVEETREIVDLEELDEHPEVSIKDDEIEEEPCSSKDSGVDSKLQEDSFEESKFEDSMGMEAEVPENGWDLNKACQTASASQQIDDFNKKDCYYYDNEAEGNYDPNVPMESPYEQQDPIYTGANILQSAEDVDFEVDGVPVIIGEFANSSVISQVDNFENISEGNVLMTIGENGLENNVKESFGTALEMEESMSRGSTQVNIQADERMPPRGELSGQESLGGASDINWNRLHYNEVSSSASYDPLGRDGWEDSDVDCPPNEEDVPSVIGYTPPILNFKCSSCDEAFSCLQERKRHIHEKHDKQNTNTIGSQIGKKKIKKLTIKPKSETEPKFDTVFTNKIKVENTECKTELDEVKPDDADSRTVCDLCNTVQSDQKSLREHRVKVHKIPDKARLKCSTCDEVFPNEYKFTEHLKVHPLECKMCGKLFYRRQNIQLHMKRHLGIKPYKCDVCEKAFLTKQKLDEHRNVHTGHAPIKCNLCNETFRRHSNLIQHRNRHHLKHKRKLKDYVCHCGEYFHSRKKLAWHKETHDTKPKACTKCNEKFVHMSSLTRHMRKAHNERFLPTEGRSNENVQCPVCKGVFVKSSLDVHMRTHTGAKPYSCLICNKDFSTRWNLKLHKWTHASRVSKPFKCDQCNGAFVRESDYVSHMNSHKSIKPYTCNYCGARFIRKYNCQRHVKEHENVKTFSCTVCGKMFHRSYYLKDHMRVHSGVRPYTCHICGKTSTTKSNHNKHVQIHHPRSPVTTET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349454;
- 90% Identity
- -
- 80% Identity
- -