Basic Information

Insect: Aphidecta obliterata
Gene Symbol: -
Assembly: GCA_963966015.1
Location: OZ014434.1:7128430-7130434[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.2 3.4e+02 2.5 0.9 5 23 114 133 113 134 0.89

2 16 0.00011 0.011 16.6 1.2 1 23 159 181 159 181 0.97

3 16 1.2e-05 0.0013 19.6 2.7 1 23 184 207 184 207 0.97

4 16 0.0015 0.16 13.0 0.8 1 21 236 256 236 257 0.94

5 16 0.0048 0.5 11.4 0.4 2 21 277 296 277 297 0.94

6 16 0.4 42 5.4 0.3 2 23 308 330 307 330 0.91

7 16 0.056 5.9 8.1 0.6 2 23 339 361 339 361 0.94

8 16 0.33 35 5.6 1.0 1 19 375 393 375 398 0.81

9 16 0.00037 0.038 14.9 1.4 1 23 408 430 408 430 0.95

10 16 3.2e-06 0.00034 21.4 1.9 1 23 436 458 436 458 0.96

11 16 2.2e-06 0.00024 21.9 0.6 1 23 464 487 464 487 0.96

12 16 6.3e-06 0.00066 20.5 1.6 1 23 495 517 495 517 0.99

13 16 1.1e-05 0.0011 19.8 2.2 1 23 523 545 523 545 0.94

14 16 0.0022 0.23 12.5 3.9 1 23 551 574 551 574 0.96

15 16 0.00032 0.033 15.1 4.6 1 23 588 610 588 610 0.97

16 16 2.4e-06 0.00026 21.8 1.0 1 23 616 639 616 639 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.2	3.4e+02	2.5	0.9	5	23	114	133	113	134	0.89
2	16	0.00011	0.011	16.6	1.2	1	23	159	181	159	181	0.97
3	16	1.2e-05	0.0013	19.6	2.7	1	23	184	207	184	207	0.97
4	16	0.0015	0.16	13.0	0.8	1	21	236	256	236	257	0.94
5	16	0.0048	0.5	11.4	0.4	2	21	277	296	277	297	0.94
6	16	0.4	42	5.4	0.3	2	23	308	330	307	330	0.91
7	16	0.056	5.9	8.1	0.6	2	23	339	361	339	361	0.94
8	16	0.33	35	5.6	1.0	1	19	375	393	375	398	0.81
9	16	0.00037	0.038	14.9	1.4	1	23	408	430	408	430	0.95
10	16	3.2e-06	0.00034	21.4	1.9	1	23	436	458	436	458	0.96
11	16	2.2e-06	0.00024	21.9	0.6	1	23	464	487	464	487	0.96
12	16	6.3e-06	0.00066	20.5	1.6	1	23	495	517	495	517	0.99
13	16	1.1e-05	0.0011	19.8	2.2	1	23	523	545	523	545	0.94
14	16	0.0022	0.23	12.5	3.9	1	23	551	574	551	574	0.96
15	16	0.00032	0.033	15.1	4.6	1	23	588	610	588	610	0.97
16	16	2.4e-06	0.00026	21.8	1.0	1	23	616	639	616	639	0.96

Sequence Information

Coding Sequence: atgaataaaaatacttGTTGTGTGTGCTTCAAAGGAAATGCATCAATTCCATTGGGTGCAAGCGATACCAACAACGAAACAATCGCATCTAAATTACGAAAAGTTGTATCCGAAGTGCCTTGGAAAGACACCTTTACAATATGCTCTCAATGTTTGGAAACTTTGGATATTGTATTAGAATTCAGAAATGCATGCATAAAATCAAGCTCTATCAGACTTGAACAAGAATGTGATTCAACAAATGAATGCACTCCAAAGCGTTATGAAAGCAGCAGTGAAGAAGAGATTGAAAAAGTTAAGGAAGAAAGCTCGGAGAGGACCATAGCTGTGACTTCTGAAATTTGTAAAATTGAACTGAATTCAAATGAACATTTATACAAACATAATAAAGAAATACATCATTCCGGGGACTTTTTCGagaatgatttgaaatttgttGAAAGAAATGATGAAACCGTAGAATatctgaataattatttttgtaaTAAATGTGAGGAAAGTTTTTCTTCAAAGACACAGTATGAAGACCATGTTGAAAGCCATGAAGTTTTCACATGTTTCCATTGTGAAAAACCATTTAAAAGCAAAGTTATGCTCGCTAAACACATCAAAGTTAAACATGATGCCCAGAAAATTCAATGTGAGGATTCAAATAGAGATAGACAGTCTCCAGATGAAAATTCAGAGGGTAGAACAAGTAAATTCTTCAAGTGCAGTAAGTGCGAAAAATCGTATAAGACTGAGAAAGTTATGATGAACCATATGGTTACTTGTGATGGCGTTACAAGGCATTCTAAAATGAATTTCACGAGGGATTTCTCTAAGAACGAGTGTGAAAAATGTGGAAGATTTTATACGACACAAAAGATTCTGAAGGCCCATTTGAAACAGTgtaagaaaaacaaatttccaaAGGAACAAAGATGTAACATATGTGATGTATTTTTAAAAACCTCCGAAGAAAAGTTCGAGCATGTTTTGAACGACCATAATATCAATTTAAAAATAGATAATACTTGTGAGTATTGTTACAAACAATTCCTAACCGGTGAAAGTTTACAATCTCATATGGAAGAAAAACATGAGAATaataaaggattgaaaagttACGCTGAAAGAAGCTACTCATGTGAAGTATGTTCGAAAGTTTTCGGTTACGTCAAAGAAGTAATCGAGCATTGTGTGAAGGAACACCAGATGGACGCAAAGTCTGTTAAACCTTACTTATGCGATAAATGTCCAACTCGGTTCATGAATTCAACGAATTTGATTCAGCACAAGCAGTACCACGAGGGAGAACGTAGTCACATATGCAGTTTTTGCGGAAAAAGTTTCATAACGAAAAGCGATCTTACAGTCCACGAATACACCCATTTAAATCGAAGGAACTATAAGTGTGAAATTTGCGAAAGGGCCTTCAACACCAATAAGAATTTGAGGTCTCATAAGTTAGTCGTCCATACTGATTCAAGTTTCTGGAAGTACCAGTGTAATTTGTGCGATAAGAAGTTCCCTTTGAAATCCGGTTTCGACCAACATATGAGGAGGCATTCGGGAGACAAGAGGTTCAAATGTTTAATTTGCGAAAAATCTTTTATAAGCAGTAGCGAACTGAAGAAACATAAGACGTTCCATTCTAACGAGAGAGCTCACAAATGTTCCCACTGCGGTAAGGAATATAAAGATCGTAGAGTTTACGAGGTACATCTGACCAAAGTTCACGGATTGGGAAATGCAAAAATACCAGTTCGAGTGAGGAAGTTCGCTTGTCACATATGTCCAGGTACGTTCTTCGATAAGCAGAAATTGTCGAGGCATATGTGCACGCATACGGGGATCAAACCGTATGTTTGTGATATTTGCGAGAAGAGATTTAGTGATAAGTCGTATTTGAAGTATCACTCGAAAGTCGTACATAATATTGTCGAAAACCAGCCTAACGAGTGA
Protein Sequence: MNKNTCCVCFKGNASIPLGASDTNNETIASKLRKVVSEVPWKDTFTICSQCLETLDIVLEFRNACIKSSSIRLEQECDSTNECTPKRYESSSEEEIEKVKEESSERTIAVTSEICKIELNSNEHLYKHNKEIHHSGDFFENDLKFVERNDETVEYLNNYFCNKCEESFSSKTQYEDHVESHEVFTCFHCEKPFKSKVMLAKHIKVKHDAQKIQCEDSNRDRQSPDENSEGRTSKFFKCSKCEKSYKTEKVMMNHMVTCDGVTRHSKMNFTRDFSKNECEKCGRFYTTQKILKAHLKQCKKNKFPKEQRCNICDVFLKTSEEKFEHVLNDHNINLKIDNTCEYCYKQFLTGESLQSHMEEKHENNKGLKSYAERSYSCEVCSKVFGYVKEVIEHCVKEHQMDAKSVKPYLCDKCPTRFMNSTNLIQHKQYHEGERSHICSFCGKSFITKSDLTVHEYTHLNRRNYKCEICERAFNTNKNLRSHKLVVHTDSSFWKYQCNLCDKKFPLKSGFDQHMRRHSGDKRFKCLICEKSFISSSELKKHKTFHSNERAHKCSHCGKEYKDRRVYEVHLTKVHGLGNAKIPVRVRKFACHICPGTFFDKQKLSRHMCTHTGIKPYVCDICEKRFSDKSYLKYHSKVVHNIVENQPNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -