Basic Information

Insect: Aphidecta obliterata
Gene Symbol: su(Hw)
Assembly: GCA_963966015.1
Location: OZ014427.1:6743918-6747736[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00016 0.017 16.1 0.4 1 23 153 178 153 178 0.95

2 13 0.02 2.1 9.5 1.4 1 23 211 234 211 234 0.92

3 13 0.00013 0.014 16.3 6.2 1 23 240 262 240 262 0.99

4 13 0.00029 0.03 15.3 1.0 5 21 270 286 268 287 0.92

5 13 1.7e-07 1.8e-05 25.4 3.8 1 23 299 321 299 321 0.99

6 13 0.0001 0.01 16.7 0.5 2 23 333 354 333 354 0.98

7 13 3.9e-07 4.1e-05 24.3 0.3 1 23 360 382 360 382 0.98

8 13 0.00033 0.034 15.1 0.9 1 23 388 410 388 410 0.98

9 13 1.3e-05 0.0014 19.5 3.0 1 23 416 438 416 438 0.95

10 13 0.00029 0.03 15.3 2.1 1 23 444 467 444 467 0.96

11 13 4.6e-05 0.0049 17.8 3.4 2 23 474 495 473 495 0.95

12 13 1.1e-06 0.00011 22.9 0.8 1 23 501 523 501 523 0.97

13 13 1.6e-06 0.00017 22.3 4.0 2 23 530 552 529 552 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00016	0.017	16.1	0.4	1	23	153	178	153	178	0.95
2	13	0.02	2.1	9.5	1.4	1	23	211	234	211	234	0.92
3	13	0.00013	0.014	16.3	6.2	1	23	240	262	240	262	0.99
4	13	0.00029	0.03	15.3	1.0	5	21	270	286	268	287	0.92
5	13	1.7e-07	1.8e-05	25.4	3.8	1	23	299	321	299	321	0.99
6	13	0.0001	0.01	16.7	0.5	2	23	333	354	333	354	0.98
7	13	3.9e-07	4.1e-05	24.3	0.3	1	23	360	382	360	382	0.98
8	13	0.00033	0.034	15.1	0.9	1	23	388	410	388	410	0.98
9	13	1.3e-05	0.0014	19.5	3.0	1	23	416	438	416	438	0.95
10	13	0.00029	0.03	15.3	2.1	1	23	444	467	444	467	0.96
11	13	4.6e-05	0.0049	17.8	3.4	2	23	474	495	473	495	0.95
12	13	1.1e-06	0.00011	22.9	0.8	1	23	501	523	501	523	0.97
13	13	1.6e-06	0.00017	22.3	4.0	2	23	530	552	529	552	0.95

Sequence Information

Coding Sequence: ATGGAAgacgaaaatgaaaaaaaaagtggaaatGTAAAGTATGAAGTTGAAACTGAcactgatgatgatgatgatgaggaggaggaggaggactGCGAGTTAGAAACTGTAGAACTTAGGAATGTTATAATGGAAACTGAAGACCTATCGAATGCAGTTATTATTGGAGCTTATGATGACAATAATTCGGATCACAACCTAGTTGTAGATAATGAGCAACAAATAGTTGGAACGTATATTGTAAGGGGTGAGTTTGATTCTCCAGATACAATTCAAGAGTATTTCATTGAATCAGAGGAATCTAGTAGTCAACACCCAGTCAATGAGATTGTTATTGAAGAATATATGGAAGAAACGGAAACGTGCGATGATCCGGAGACGGAAGAGGAAGAAAAGCCAACATGTAGTGAAATTAGAGAAGAAATGCTAGAGCAAAAATCTCCAAAGTCAAGTGAATTTGAGTGCAACATATTATTATGTAAAAGATCATTCAAAACTGCTGTTGGACTTAAGAGGCATAAAATTATAAGTCATCCATATACTGATGTTTGTGAAGATGATCCTCTGACCCTCCAGATTTGTGCATGTTGTGGAGATCCACTCGATTCTAATACACATACCGTCGGCGATCATCAGTGTACAATATGTTCCAAGTTATTCATTCAGAAGAGCATTCTTGATCGTCATACAAGCTTGGAACACCCTGAAGGAAATAATTATAAATGTTCGGAATGCAAATTCTCTTGCACAAGAAAAGAAGACTTCAAGCAACATCTGCAAACCCACAGTTTCAAAATGGTCAAGTGTGTTTGCAACAAAGAATTCACTAGGAAGTACCATTTAGAGCGTCATCTGCAAATATCTGGGTGTGGGGGCAACAAAGCTGACCCCATGTTCAAATGTAAGATTTGCTCTAAAGAATTCTACAGACGAGATAACTTCAAGGTACATATGAGAACCCATTCTACGGGAATCAAGAAAGAAAAATCAGGTCGACAGTGTCAATTCTGCAGCAAAGAATTCTCGTCGGTGGGTCTACTGAACGTACATGTCCGGACCCATACTGGTGAAAAACCCTATGCATGTGAACAATGTGACAAAAAATTTCCTTCAACTGGAGCATTGAAGAAACACATGCGGGTCCATACAGGAGAGAAGCCTTACGAGTGCAAATTCTGTTCAAATCGATTTGCTGCAAAAGAAACTTTGAATAGGCACGTTCGAATACACACAGGGGAAAAACCGCACTCCTGCAAGTTCTGTGGAAAAAGTTTCATACAAgCAGCTCAATTAAGGGCACATATATTTCATCATACAGGTGAAAACGCCTATATCTGTCAATATTGTAACAGAGGTTTCAATAGGAAATTGAGACTTACCACTCACATCAAATATATGCATGAAGGAGCTGAGCCACTGCATTGCAAGGAATGCGATAAGACCTTTTTCAGAAAGGAAGATCTGTCCAGGCACACTATACAACATACTGGAGCAAGACCCTTTATTTGTGAAGTATGCGATAAATCGTTCTCCGTCAAATCCTCTCTCAAGCTCCATAAATTAACTCACAATAAGGAGGTACCATGTACTTGTGAATATTGCGGGAGGGTTTTCATAAGACAAGATTGCTTAATGAGACATATGAGGGCTAGACATCGGGATTTCCTGGAAGACATAATGATATCGGCTGAGAAGAAGAGGCTCCAACAGCAACTTCTGGGTGCTATTTCGGAAGCTGCCGAACAGGATCAGAAAAGTATAGTCGAAAGTATTGTTTGGAATGAGTTCACACTGACGGAATCGATAAAGGAATTATTAACTCTATTAGTTGACGACGAATGTTTGAAAGAACTTGGCTACCCCGATACACCGGTTGATAAAGTACTTGGCGCCGTAATAAGAAGATGTGGACATGAGCCAGTTTCAGATGAAGATTTCGATTACATCGGAAGGTTGAGAGAAAATGCCAAGTTGTTATTTACAGCCGTTATAGATGATGAAGCTGTGAAATCTCTCTTAAACAATCAAACTGTTGATGAAGTTATTTTGCATGTGTTACGTTTAGCTAATAAGACATAG
Protein Sequence: MEDENEKKSGNVKYEVETDTDDDDDEEEEEDCELETVELRNVIMETEDLSNAVIIGAYDDNNSDHNLVVDNEQQIVGTYIVRGEFDSPDTIQEYFIESEESSSQHPVNEIVIEEYMEETETCDDPETEEEEKPTCSEIREEMLEQKSPKSSEFECNILLCKRSFKTAVGLKRHKIISHPYTDVCEDDPLTLQICACCGDPLDSNTHTVGDHQCTICSKLFIQKSILDRHTSLEHPEGNNYKCSECKFSCTRKEDFKQHLQTHSFKMVKCVCNKEFTRKYHLERHLQISGCGGNKADPMFKCKICSKEFYRRDNFKVHMRTHSTGIKKEKSGRQCQFCSKEFSSVGLLNVHVRTHTGEKPYACEQCDKKFPSTGALKKHMRVHTGEKPYECKFCSNRFAAKETLNRHVRIHTGEKPHSCKFCGKSFIQAAQLRAHIFHHTGENAYICQYCNRGFNRKLRLTTHIKYMHEGAEPLHCKECDKTFFRKEDLSRHTIQHTGARPFICEVCDKSFSVKSSLKLHKLTHNKEVPCTCEYCGRVFIRQDCLMRHMRARHRDFLEDIMISAEKKRLQQQLLGAISEAAEQDQKSIVESIVWNEFTLTESIKELLTLLVDDECLKELGYPDTPVDKVLGAVIRRCGHEPVSDEDFDYIGRLRENAKLLFTAVIDDEAVKSLLNNQTVDEVILHVLRLANKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00764919;
90% Identity: -
80% Identity: -