Aobl005629.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidecta obliterata
Gene Symbol
PLAGL1
Assembly
GCA_963966015.1
Location
OZ014428.1:29026306-29030591[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.015 1.6 9.9 0.4 1 21 28 48 28 49 0.95
2 17 0.025 2.6 9.2 3.8 1 23 55 78 55 78 0.93
3 17 0.036 3.8 8.7 1.5 1 21 211 231 211 232 0.95
4 17 0.016 1.7 9.8 0.4 3 23 240 261 239 261 0.92
5 17 0.0074 0.78 10.8 1.5 3 23 267 287 266 287 0.97
6 17 0.0029 0.31 12.1 4.1 1 23 293 316 293 316 0.96
7 17 6.3e-05 0.0066 17.4 3.4 1 23 321 343 321 343 0.98
8 17 0.00041 0.044 14.8 4.4 1 23 457 479 457 479 0.98
9 17 8.2e-06 0.00086 20.1 4.7 1 23 485 507 485 507 0.98
10 17 8.9e-05 0.0094 16.9 5.4 1 23 512 534 512 534 0.99
11 17 0.00031 0.033 15.2 1.4 2 23 541 562 541 563 0.95
12 17 1.6e-05 0.0017 19.2 0.2 1 23 568 590 568 590 0.98
13 17 0.00061 0.065 14.2 0.5 1 23 600 622 600 622 0.97
14 17 0.00014 0.015 16.2 0.5 1 23 628 650 628 650 0.98
15 17 2.6e-05 0.0027 18.6 0.1 1 23 656 678 656 678 0.98
16 17 1.3e-07 1.3e-05 25.8 1.1 3 23 686 706 684 706 0.98
17 17 8.7e-06 0.00091 20.1 3.2 5 23 715 733 712 733 0.96

Sequence Information

Coding Sequence
ATGGTTTCTTGTTTGATAACTTTACCCATTTCCAGATACGAGATATACGACCCCTCCACTTACGACGATCCAGAGTCGAATTACAAATGTGAAGTTTGTACCGGAATATTCGAAACCAAAGAGGATTACTTCGCTCATCACATGAGCCAATGTGGCAAAAAGTTCATGTGCTGCAAATGTTCGGAAAGTTTCAAGACTATTTCCAGTCTTTACGATCATTCGGAAAAGTTCCACGTCAAACAAGAACCGGAAGAGGAGGAGGAGATCGTCCTGGATTATAACGGCCAACTTGTCAAGATCCCGAATCAGAACGTGGCCGAATCCAACGAACTCCTCTACGTTCTGGACGATTCCCAATGCGTCAACGAAGTGGTTATCGAAGAACAACAATGCGAACAAGAAAAGAACGATATATTGGAAACTATCAGAATTGTTAGGTTGGAACATGGGTATATGCTGCAAGAAGACGAAACGAGCAACACCGAATCAGTGAATAGTCCACGTGTTAAAAAGGTCCATCCTACTCCGAAATCTAGGGGCAGTGTCTTGAAGAGGAGACACGAGTTGCCAGATTTTACTACAACAAACTATTTGTATATACAGCCGAATGAGGAGATTGACATACCACATTATAAATGCCTGCGTTGCGAACAGTTGTTCATCAATAAGTTCTCTTTCTTCAGGCATATAGAGAAGGGAAAATGCTATATTAATAACTGCGACGTGTGTACAGAAACGTTCTCGAAGAACACCGAATTCTACATGCACTACGTGGTCGAGCATAAGGACAGGGCTATCTGCAATTTTTGTTTCCGCACCTTCATGTACGAGAAGAACGTCAAAGAACATATGCTGCGTCATTTGGACCAGTTTCGGCACCGGTGCGAAGAATGCAACAAAGGTTTTTATACTGTGAGAGAGTATAGGAACCATTATAAGAACAGGCATATGGGGATTAGACATAAATGCGAGTTCTGTTCGAGAACATTCGCAGATGAATATTACTTCAAACGGCATATCGCAACGCATAAACTGAAAGTTGAATATATCATAGATTCTCAAGAATGTTTCTATCGTGAAGAAACCTACTCGAATTTCAACCTACAAGACGAGTTTTGCTACATACCCGAACTGAAACAAGACCACCAACTCGATCACGACCTCCTTCAGGGTTCCGTAGATCAGTTCAGCCCCACCGACACGGAGTTGTTGAGGATGCTGACGACCGAGGAAGAATGTACGGCCATCTTACAGAATATCGCGGCCAGCGAACAACTCGAAAGTTTGATCAACACTGGTACGTCTTTCCCACAACCTGTTGAGGTTCAAATTGCTGACGTACAAGATGTAAATAAGAAAGAGGCAAACTTTAAATGTGAAATTTGTAACAGATGTTATACGAcgaagaaaatattgaagaaacatTTGGGGACGCATACTGGAACGAAATCTTTCTCGTGCAACGTTTGTGGGAAGAGGTTTAGACATAAATGCGATTTAACTGCCCATGAGAAGGTGCATGATAAACCTGGCTTCCAGTGTGATATATGTTCCAGCATGTTTATACACAAATCGCATCTTATAACACATAGGCGCAAACATTTGGGGGAGTTCGTAGCCTATTGCAAGGATTGCGGTATCGGTTTTGTCAGGAAGAACTTATACGATAACCATAGAAGAATACATCACGACGGCGAGAAATATATATGTGATATTTGTGGACAATCCCTGTCCACTTCTTCAGGCCTGAAGGAGCACAAATCCACACACGATGAAAATTACGGTAAAGACCGACAACACGTTTGTGAAATTTGTGGGAACCGCTATTTGACCTCGAGGAATCTGAACGCCCATATGTCCATCCACAGCAGGGCGAGGAAATACATCTGCAACATTTGCGGGAAATCGGTCAGCAGCAAGAAGATCCTGGAAACTCACACGAAGATGCACACAGGCGTCAAGGATTATATCTGCAACATCTGTAATACACCATTCGCTTCCGGCGAATACTTGAAGGTTCACCAGAGGATACACAGCGTGAATAAACCTTACGGTTGTCAAACTTGCGGCAAAAGTTTCACGCAGAAAACTTCTCTGACCGTGCACATCAGGACCCATACGGGACAGAAACCTTACAAGTGCGAGTGCGGCAAGAATTTCACCACCAAGAGTCACCTGATGGCCCATTACAGAACGCACGATGTTGGCGGTGTTGATCTGGAATTCATTTCTAACATCGAAAAGTTGAAGTGA
Protein Sequence
MVSCLITLPISRYEIYDPSTYDDPESNYKCEVCTGIFETKEDYFAHHMSQCGKKFMCCKCSESFKTISSLYDHSEKFHVKQEPEEEEEIVLDYNGQLVKIPNQNVAESNELLYVLDDSQCVNEVVIEEQQCEQEKNDILETIRIVRLEHGYMLQEDETSNTESVNSPRVKKVHPTPKSRGSVLKRRHELPDFTTTNYLYIQPNEEIDIPHYKCLRCEQLFINKFSFFRHIEKGKCYINNCDVCTETFSKNTEFYMHYVVEHKDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECNKGFYTVREYRNHYKNRHMGIRHKCEFCSRTFADEYYFKRHIATHKLKVEYIIDSQECFYREETYSNFNLQDEFCYIPELKQDHQLDHDLLQGSVDQFSPTDTELLRMLTTEEECTAILQNIAASEQLESLINTGTSFPQPVEVQIADVQDVNKKEANFKCEICNRCYTTKKILKKHLGTHTGTKSFSCNVCGKRFRHKCDLTAHEKVHDKPGFQCDICSSMFIHKSHLITHRRKHLGEFVAYCKDCGIGFVRKNLYDNHRRIHHDGEKYICDICGQSLSTSSGLKEHKSTHDENYGKDRQHVCEICGNRYLTSRNLNAHMSIHSRARKYICNICGKSVSSKKILETHTKMHTGVKDYICNICNTPFASGEYLKVHQRIHSVNKPYGCQTCGKSFTQKTSLTVHIRTHTGQKPYKCECGKNFTTKSHLMAHYRTHDVGGVDLEFISNIEKLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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