Aobl017773.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- Hivep1
- Assembly
- GCA_963966015.1
- Location
- OZ014433.1:13419826-13427868[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.32 34 5.7 0.0 2 23 85 107 84 107 0.96 2 24 0.00015 0.016 16.2 2.1 1 23 108 130 108 130 0.98 3 24 0.14 15 6.8 0.4 1 23 136 158 136 158 0.96 4 24 8.3e-05 0.0087 17.0 0.1 2 23 163 184 162 184 0.96 5 24 0.004 0.42 11.7 0.1 1 23 190 212 190 212 0.99 6 24 0.031 3.3 8.9 0.8 2 20 225 243 224 246 0.93 7 24 2.3e-06 0.00025 21.8 2.0 1 23 271 293 271 293 0.98 8 24 1.8e-06 0.00019 22.2 0.3 1 23 299 321 299 321 0.98 9 24 0.006 0.63 11.1 2.2 3 23 329 350 327 350 0.97 10 24 0.0053 0.55 11.3 6.0 1 23 360 383 360 383 0.98 11 24 1.3e-06 0.00013 22.7 0.7 1 23 460 482 460 482 0.98 12 24 0.00047 0.049 14.6 1.7 5 23 491 509 488 509 0.95 13 24 0.86 90 4.3 1.0 2 23 513 534 512 534 0.97 14 24 0.00096 0.1 13.6 1.6 2 23 572 593 571 593 0.97 15 24 0.0035 0.37 11.9 2.4 2 21 600 619 599 621 0.94 16 24 1.6e-05 0.0017 19.2 4.0 1 23 627 649 627 649 0.98 17 24 0.0008 0.084 13.9 4.2 1 23 655 677 655 677 0.97 18 24 3.7 3.9e+02 2.3 2.8 3 21 953 971 951 972 0.89 19 24 4.3e-05 0.0045 17.9 0.7 1 23 1018 1040 1018 1040 0.98 20 24 9.3e-06 0.00098 20.0 1.5 1 23 1046 1068 1046 1068 0.97 21 24 0.076 7.9 7.7 5.6 1 23 1074 1096 1074 1096 0.97 22 24 0.069 7.2 7.8 2.8 1 23 1104 1126 1104 1126 0.97 23 24 0.0024 0.25 12.4 0.5 3 23 1277 1298 1276 1298 0.96 24 24 0.23 24 6.1 0.1 1 22 1308 1329 1308 1329 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGATTGAATTCATACATTGTTCTTTCTATGAATGGTGATGAATCTGTATTCATCCCCGATCTTGTTCCCGGTTATCTTCCAAATTTATTCGTTACTGAAACTTGTAGTCCAAAGATTCTTACAGATGTCGAGTTCTTGGCTTCACATAATGCCGGAGGTAGTGTAAACACCAATAACGAAAATTTGGTTCTTGAACCACCACCACCACATTCAAATAATGAAGTCGTGTCAGATAATACCATGATCAAATGCCCCCTTTGTGAAGATACTTTTGATGATATTAATCTATACATAATACACCAGAATGTGAATCATTATGCTTGCTCCAAATGTAACAAGTCTTTCAAGGAAGTGAATTTGTTTAAAAAACATTTATTGACACATGTAGATGATAAGCTCTACAATTGTGTTTTATGTAGTAGTGGTTTCAATTTTGAGAACAATTATAAAGTACATATGGCTCTACATGGAAACTCATTAGTGTGCCCTATATGTGAATTGTCATTCCAAAGAAAGGCTAGTTTGAAGTCTCATTTAGCCATTCACCAAGTTGAGGAATTTTATACTTGTCCAGAATGTGCATCAGAATTCGAGAATATGGTGGTACTGAGGAAACATATTAAAACTCATATTATACaggttaataaaaataaacccaCAGGATTAATCTGTAACTATTGTAAAGTGAAGTTTGATACTCCCATTCTATTGAAACAACATGTTGCTTGTCATTTGAAGGTGAAAAGACTTGTACTCAATGGCAAGAAAGCGAGAAAAAAGCAAGTTGAAGGAAAAGAGTTGAAGCATAAGTGTAAAGTGTGTGAGAAAACATTTCCTAAATTGTCCTTATTAGAAAGACATTTGCGGATTCATAATGGTGATCGTCCATTTGAGTGTCCCATTTGTTCCAAAGGCTTTTCACAAAAAGGAACTCTACAAATCCATTTGTCGAAACATTCTGGGGTGAAACCATTCTGGTGTACATTATGTCCAGCGAAGTTCTATCAGAAATGCAATTTGAAAGTACATGTTCAGAAAACTCATACTGCAATATCAGAAGgagagaaaaattttcaatgctCTAAATGTCACTGTATTTTTAAGAAAGTTGCTTCATTGAATGGACATATGAGAAAGTTTCATGCAGACACTAGTCCGATCACCATAACCACAGTTATTGATCAGTTGAAAGATCTAGAAAAACAATTAGGTGGTAATATTGCAGAATCCGAAAGAAGCAGAACTACCGAAAATCCTTCAAATCtttcaaatttggatacctcTCATCAACATGATATTCCCAAggcaaataaaaatgaaaacttGAGAGTTTATTCTCTTATTCAAAAAGAGGATGGTCCCAATAAGGTTTACATTTGTTCTTACTGTAATAAAGAATCTAAGAAACCTTCAGATTTAATTCGTCACATTAGGACCCACACCAAAGAGAAGCCATTCAAGTGCCACTGTGGTAGATcatttgcgataaaatcaaCACTTCAAGCACATATGCAAATACATAAGGCAAAAAAATGCTTGAAATGTTCAATGGTAACTTTTTCAGCTAAAGTATGGAGGGCTCATTTGAGgaaACATCGAACCGACTCGATACATAAAAACAACACAGAGCTTCAAGAATGCCAGGACGTTGTAGtacgcGAGCCCTTATCCTCCAAAACCAAAAACTTCATTTCCGATAAACCAGTGAAATGCCAATTATGTCCATCATCATTTTTGAGGAAAACGAGTTTGAAGCGGCATATGCGGTTACACACTGGAGACAGAACGTCCAAGTGTGAGATATGTTCAAGATTATTTGTCTCGGCATATAGTTTGAAGAAGCACATAAAATGCCACACAGCTCCCAAAAATTTCAGCTGTGATTtgtgcaacaaaaaattcaccAAGCAATCATTATTGAAACGTCATTTTTCAACACACGATAATACTAAACCATACGAATGTCCTTATTGCGGAAAaagattcaaaaaattgacgatGTGCAGAAAACATATTGATAAACATGGAGAATTCAATGGAGTTCAGaacaaaaccCAGGATGAATGTAATATTACCATTGGGGAAAATAATCTTCCTTTAAATAACTTCTCAGATAATTTATCACAGAAATCTATATTGAGGGTGGATGCAAATGGTGTAGTTTTTGATCATTCTTTTGACGTTCAGCAAAACAACAATGCAAAAACAAATCCAGTCTTAGAATCAGTGCAGACTATCAATCAACCAACCGCCATTGTAGATTCTTCGTCAGTTTTAGAttctcaacaaaatcagaatcTCCAAACTATTTTAGTGAGTTGTCCAGAATTGGAAAATAGTGAGGTATTGAATAATTATATTTTGTCCGAGTTGAAATTACAGACAAACGATGCTATCATTCTAAATGCAGTAAATGATGATAATAAACAATCTTCCATTGTGTTAAAGGTCCAAAATCTCAATGTTGACCCTCTGCCGAATGTTGAGAATGTAATCGACGAAGACGCATATTCCCATGAGTTAGGAGAAAAATCAGTAGATCCTGTTTTCAATTTCACAGAAACGAGGTCACTACTGAAAAAAAGTCGGATAATAAGTCCTACTCTTGAACCTACCAAAAGTTGTATACAGAATGATATTGGGGATAATTTTCTGTCtaataatatttcattatatcCAAACACACGAATCAATTTCGATGCCACTCGAGAACTGAATTCGGATACAGTTAATGTAATAGAATCTACTGGTGATGCATTTATGGAGGTATTAGATAATGCTAATTGTAATCTTCAGTCGTTGGATGTTGCAACTGAAACACAGGAAACTGTGAATTTGAGTATGATCCATTGTTTGGCGtgcaaaaaaatgtttgatacTATGGAATCTTATCACAAGCATGTTTGTATGAAATCcattttgaaaaagaataatGTCTCAATTCCATGTGAAGAACTTCAGGAGGAAGTAAATCAGAAATGTGATGGTGAAAGTACAGACGTTGATAAAGTGAATGAAAAATCGAAGAAGGTTCTTAAGAGATTTTTCAGCTGTGTCTATTGTGGAAAGGAATTCAGTAATAGCGGTGTTTACAGGAAGCATGTCAATTCACACCAGGAAAATGGCTTGCATATATGCAAATTTTGTGAGAAAGTGTTCAGAAAACCATCTGATTTAGGACGTCATCTGAGAATACATACTGGAGAGAAACCATTCGCATGTGATAAGTGTGACAAAAAATTCAGGTTGAAATGTACATTGGAGTTTCATTATAAAACACACAATCCAAGTGCTGCTAAAAAATTTGTTTGTGAGGTCTGCAACTCATTTTTCAGTTCTATGTCTAGTAAAAAGTTGCATATGCATCTGCATACTGGAGCCAAACCTCATAAATGTAACTACTGTGACCAACACTTCAGGACTATTGCTCATAGGAAATGTCATGAGAAGAAAATGCACTTGAGTACTCGAGAAAAAAAGGTGAACCAGAGCAAGGCTAAAAGAATAACTAATATACTGGCTGCTGCAGTAGATATGGCGGTGAATGAAGTTTCTAGTGATAACCAAGCATTAGAACAACATGACATTCCTGGATACTCTGAAATTCAGgtgGAATTTGCTGACCCATCAGATTCAATTCAAATCGACCAAACACTCTTACATCTCCAAAGCTCCAATATTTTTCTAGAAGAAATAGATCATAATGTCCTAGCATGTTCTGAAAGTGTTGATGATTTAGTGGATTTGGAAGCTAGAGATATAATCGATTCTGAATGCTTTGAAGAAAATGTCGCAAAAAATCATGTTGGCGGAAATTCGTTGTGCGATATATGTCAAGAAGAATGTGATACACCAGATGCCCTGCGTAAACATATTATGCAATTCCATGAACAGTCACATTTAGATAGAGAATCATATTCTTGTTTTCTTTGTGATATCAGTTTAGTGGGAGTGCAACAGTTGAAGACCCACTTGAGAAGGTGA
- Protein Sequence
- MEGLNSYIVLSMNGDESVFIPDLVPGYLPNLFVTETCSPKILTDVEFLASHNAGGSVNTNNENLVLEPPPPHSNNEVVSDNTMIKCPLCEDTFDDINLYIIHQNVNHYACSKCNKSFKEVNLFKKHLLTHVDDKLYNCVLCSSGFNFENNYKVHMALHGNSLVCPICELSFQRKASLKSHLAIHQVEEFYTCPECASEFENMVVLRKHIKTHIIQVNKNKPTGLICNYCKVKFDTPILLKQHVACHLKVKRLVLNGKKARKKQVEGKELKHKCKVCEKTFPKLSLLERHLRIHNGDRPFECPICSKGFSQKGTLQIHLSKHSGVKPFWCTLCPAKFYQKCNLKVHVQKTHTAISEGEKNFQCSKCHCIFKKVASLNGHMRKFHADTSPITITTVIDQLKDLEKQLGGNIAESERSRTTENPSNLSNLDTSHQHDIPKANKNENLRVYSLIQKEDGPNKVYICSYCNKESKKPSDLIRHIRTHTKEKPFKCHCGRSFAIKSTLQAHMQIHKAKKCLKCSMVTFSAKVWRAHLRKHRTDSIHKNNTELQECQDVVVREPLSSKTKNFISDKPVKCQLCPSSFLRKTSLKRHMRLHTGDRTSKCEICSRLFVSAYSLKKHIKCHTAPKNFSCDLCNKKFTKQSLLKRHFSTHDNTKPYECPYCGKRFKKLTMCRKHIDKHGEFNGVQNKTQDECNITIGENNLPLNNFSDNLSQKSILRVDANGVVFDHSFDVQQNNNAKTNPVLESVQTINQPTAIVDSSSVLDSQQNQNLQTILVSCPELENSEVLNNYILSELKLQTNDAIILNAVNDDNKQSSIVLKVQNLNVDPLPNVENVIDEDAYSHELGEKSVDPVFNFTETRSLLKKSRIISPTLEPTKSCIQNDIGDNFLSNNISLYPNTRINFDATRELNSDTVNVIESTGDAFMEVLDNANCNLQSLDVATETQETVNLSMIHCLACKKMFDTMESYHKHVCMKSILKKNNVSIPCEELQEEVNQKCDGESTDVDKVNEKSKKVLKRFFSCVYCGKEFSNSGVYRKHVNSHQENGLHICKFCEKVFRKPSDLGRHLRIHTGEKPFACDKCDKKFRLKCTLEFHYKTHNPSAAKKFVCEVCNSFFSSMSSKKLHMHLHTGAKPHKCNYCDQHFRTIAHRKCHEKKMHLSTREKKVNQSKAKRITNILAAAVDMAVNEVSSDNQALEQHDIPGYSEIQVEFADPSDSIQIDQTLLHLQSSNIFLEEIDHNVLACSESVDDLVDLEARDIIDSECFEENVAKNHVGGNSLCDICQEECDTPDALRKHIMQFHEQSHLDRESYSCFLCDISLVGVQQLKTHLRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -