Basic Information

Insect: Aphidecta obliterata
Gene Symbol: -
Assembly: GCA_963966015.1
Location: OZ014428.1:29031813-29035934[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.006 0.63 11.1 1.9 1 23 46 68 46 68 0.96

2 18 1.6e-05 0.0017 19.2 1.5 1 23 74 96 74 96 0.98

3 18 0.00057 0.06 14.3 1.4 1 23 102 124 102 124 0.99

4 18 0.0055 0.58 11.2 0.2 2 23 131 153 131 153 0.92

5 18 0.00023 0.024 15.6 1.2 1 23 158 180 158 180 0.97

6 18 0.041 4.3 8.5 8.0 1 23 190 213 190 213 0.96

7 18 1.8e-05 0.0019 19.0 1.2 1 23 220 242 220 242 0.98

8 18 5.8e-06 0.00061 20.6 0.5 2 23 249 270 248 270 0.97

9 18 5e-08 5.3e-06 27.1 2.1 1 22 276 297 276 297 0.97

10 18 0.55 58 4.9 0.3 3 16 390 403 388 410 0.82

11 18 0.89 93 4.3 4.1 1 23 416 438 416 438 0.95

12 18 0.004 0.42 11.7 1.8 1 23 444 466 444 466 0.90

13 18 0.00011 0.012 16.6 3.4 1 23 472 495 472 495 0.98

14 18 3.6e-06 0.00038 21.3 2.2 1 23 507 530 507 530 0.96

15 18 0.001 0.11 13.5 1.0 3 23 541 561 540 561 0.98

16 18 5e-06 0.00053 20.8 0.6 3 23 569 589 567 589 0.97

17 18 5.8e-07 6.1e-05 23.8 0.3 1 23 595 617 595 617 0.98

18 18 0.013 1.4 10.0 0.1 1 21 623 643 623 644 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.006	0.63	11.1	1.9	1	23	46	68	46	68	0.96
2	18	1.6e-05	0.0017	19.2	1.5	1	23	74	96	74	96	0.98
3	18	0.00057	0.06	14.3	1.4	1	23	102	124	102	124	0.99
4	18	0.0055	0.58	11.2	0.2	2	23	131	153	131	153	0.92
5	18	0.00023	0.024	15.6	1.2	1	23	158	180	158	180	0.97
6	18	0.041	4.3	8.5	8.0	1	23	190	213	190	213	0.96
7	18	1.8e-05	0.0019	19.0	1.2	1	23	220	242	220	242	0.98
8	18	5.8e-06	0.00061	20.6	0.5	2	23	249	270	248	270	0.97
9	18	5e-08	5.3e-06	27.1	2.1	1	22	276	297	276	297	0.97
10	18	0.55	58	4.9	0.3	3	16	390	403	388	410	0.82
11	18	0.89	93	4.3	4.1	1	23	416	438	416	438	0.95
12	18	0.004	0.42	11.7	1.8	1	23	444	466	444	466	0.90
13	18	0.00011	0.012	16.6	3.4	1	23	472	495	472	495	0.98
14	18	3.6e-06	0.00038	21.3	2.2	1	23	507	530	507	530	0.96
15	18	0.001	0.11	13.5	1.0	3	23	541	561	540	561	0.98
16	18	5e-06	0.00053	20.8	0.6	3	23	569	589	567	589	0.97
17	18	5.8e-07	6.1e-05	23.8	0.3	1	23	595	617	595	617	0.98
18	18	0.013	1.4	10.0	0.1	1	21	623	643	623	644	0.94

Sequence Information

Coding Sequence: ATGCTTCATAAGAGTAAAACCgaaacaaaaattcataatggaGCGATATTTAGCTTTAAGTATAGGGCCAACAACGGAAACTCATCCGATATAATATGCGAAGTGAAGATCGAAGAAGATCAAAGCGGTTTTCCCTTCAGCTGCCCCCAGTGTGCTAAGggattccataaaaaaatcagACTGAAGAAGCACCTCTTGGCCCACAGCCAAGAGCGCCCCTTCGAGTGCGGCATTtgcaaaaagaaattcaaaagaaaataCGAAGTCACCGTGCACAACAGAATCCACACGAACTCCAACTCTTTCCAGTGCGATTTCTGTCTGAAGATCTTAAAGTCCAAAGGTTCGCTCAGCACCCACATAAAGCGACACCTGAAGGAATACGTGGCGACTTGCGAATTTTGCGGGGCCGGGTTCGTGACGAAACAGGAATACCAGAACCACGTGGGTTCGAAACATGGACGCAGCATCCACGTTTGCGACATCTGCGACAGACCCTGCTACGACAAAGCGGCTCTGCAGAGTCATCGGGCCAGACACGCGGAAGGTTACGAGACGAACCCTAAACACAAGTGCGATTTGTGCAATAAGACCTTCCTGCAAGAGAAATACCTCAAGCACCACCACATGAGGATCCACAAGAACGGTGGACAGAGGTACATATGCGACCACTGTGGGAAGAGGGTCAACTCGAAGAGGAGCCTCAGGGACCACCTGTTGATCCATAAGGGTTTGAAGCCGGTCGAGTGTCCACAGTGCGACAAGAAGTTCGCTCTGAAGACAACCCTGAACCTTCATCTTAGGACTCATTCGGGAGTTAGGCCTTATAAATGCCAAGATTGTGGAAAATCTTTTACACAGAGAAGTTCCTACAAGACCCATATGAGATCGCAAAATCGAACTGCAAGCGTCGCAGAAGAAATAGAACTGTCGAAATTTATAAAGGCCGAGATCAAATCGGACGATGAGCACGAAATGGCGGAAGTGAAGGTCGAGTACGACGAAGATATCATGTACCCAGTGTCGGACGGGAATTCCGACGATAGCGAGTACAAGCCGGAAAGCCAAGCGAAAAAACCAAAGAAGACGAACAAGGGCAGCATGTTGAAGAAAGAACTGCTGAAGAAGTCTGACGACGAGATCAGAGACGCGGTGAACCCTGTCCACTGCGACATTTGTGATATAACGTATAAGAACAGCATAATGTTCGCGTTCCATTCCATACAACACAACGACGATAAGAAGTATTCGTGTCACCTGTGCGGTTTTCGGAGCCTGTCCAAGTACCACACCGAGATGCACATCAGGGCCCACGAGGGTACCAGCAAGTACAAATGTGAAGTCTGCAACAAGGCCTTCACGGTCAGCACTCACGCCGCCGAGCATAAATACTTCCACACCGGGGAAAAACCTTTCCAGTGCGAGATCTGCGGGAAACACTTCATGTTCTCCTGGTTCTTGACCTCGCACAGACGCTCTCAGCACTGGGAAATAATGACGGGCATGCCGTTGGTCAAGTACGACTGCCAGATCTGCAACAAGCACTACACCTCGGCGTCGGGGTTGAAACGTCACCAGAGGGCCAAGCACGAGCTGCCAGGCCCTCAGGTGTCCGTCCTCTGCGATATCTGCGGTAAGAGTCTCTCCAGCAAGGAAAAGTTGAAATTCCACAGGAGGATCCATACAGGCTTCAAGCCGTATGGCTGCGAGATCTGCTCGAAGAACTTCTCGAGGAAAGAGCAGTTGAAGGAGCACGAAAGGGTCCACACTGGGGAGAAACCCTACATCTGCGGATATTGCGGGAAGGGGTTCTCGCAGAGATCTCCCTTACGCATCCACGAGAGGACCCACACTGGCGAAAGACCCTACGTTTGTAGATTGTGCGGTAGGGGTTTCATCTCCAAAGGCGTGATGGACAGTCACATGAAGAACTGTCAAGTGGTGATTATACCATAA
Protein Sequence: MLHKSKTETKIHNGAIFSFKYRANNGNSSDIICEVKIEEDQSGFPFSCPQCAKGFHKKIRLKKHLLAHSQERPFECGICKKKFKRKYEVTVHNRIHTNSNSFQCDFCLKILKSKGSLSTHIKRHLKEYVATCEFCGAGFVTKQEYQNHVGSKHGRSIHVCDICDRPCYDKAALQSHRARHAEGYETNPKHKCDLCNKTFLQEKYLKHHHMRIHKNGGQRYICDHCGKRVNSKRSLRDHLLIHKGLKPVECPQCDKKFALKTTLNLHLRTHSGVRPYKCQDCGKSFTQRSSYKTHMRSQNRTASVAEEIELSKFIKAEIKSDDEHEMAEVKVEYDEDIMYPVSDGNSDDSEYKPESQAKKPKKTNKGSMLKKELLKKSDDEIRDAVNPVHCDICDITYKNSIMFAFHSIQHNDDKKYSCHLCGFRSLSKYHTEMHIRAHEGTSKYKCEVCNKAFTVSTHAAEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRSQHWEIMTGMPLVKYDCQICNKHYTSASGLKRHQRAKHELPGPQVSVLCDICGKSLSSKEKLKFHRRIHTGFKPYGCEICSKNFSRKEQLKEHERVHTGEKPYICGYCGKGFSQRSPLRIHERTHTGERPYVCRLCGRGFISKGVMDSHMKNCQVVIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00965368;
90% Identity: -
80% Identity: -