Basic Information

Insect: Aphidecta obliterata
Gene Symbol: -
Assembly: GCA_963966015.1
Location: OZ014431.1:23515076-23546274[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.4e-05 0.0078 17.1 0.6 2 23 409 430 409 430 0.97

2 18 2.3e-05 0.0025 18.7 1.8 1 20 436 455 436 458 0.94

3 18 1.8e-05 0.0019 19.0 3.0 1 23 464 486 464 486 0.98

4 18 1.6e-06 0.00017 22.3 0.6 1 20 492 511 492 513 0.94

5 18 2.4e-05 0.0025 18.7 4.6 1 23 603 625 603 625 0.99

6 18 2.3e-05 0.0024 18.7 5.3 1 23 631 653 631 653 0.97

7 18 1.4e-06 0.00015 22.5 5.8 1 23 659 681 659 681 0.98

8 18 9e-08 9.4e-06 26.3 2.7 1 23 687 709 687 709 0.98

9 18 6.6e-05 0.007 17.3 6.7 1 23 715 737 715 737 0.97

10 18 3.9e-05 0.0041 18.0 5.8 1 23 743 765 743 765 0.97

11 18 4.3e-07 4.5e-05 24.2 2.8 1 23 771 793 771 793 0.98

12 18 3.1e-05 0.0032 18.3 8.0 1 23 799 821 799 821 0.98

13 18 2.6e-05 0.0027 18.6 9.1 1 23 827 849 827 849 0.98

14 18 1.5e-05 0.0016 19.3 7.7 1 23 855 877 855 877 0.98

15 18 1e-05 0.0011 19.9 7.1 1 23 883 905 883 905 0.97

16 18 0.00015 0.016 16.2 0.2 1 23 911 933 911 933 0.97

17 18 0.024 2.5 9.3 5.1 1 23 943 965 943 965 0.98

18 18 0.014 1.4 10.0 0.3 1 11 971 981 971 984 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.4e-05	0.0078	17.1	0.6	2	23	409	430	409	430	0.97
2	18	2.3e-05	0.0025	18.7	1.8	1	20	436	455	436	458	0.94
3	18	1.8e-05	0.0019	19.0	3.0	1	23	464	486	464	486	0.98
4	18	1.6e-06	0.00017	22.3	0.6	1	20	492	511	492	513	0.94
5	18	2.4e-05	0.0025	18.7	4.6	1	23	603	625	603	625	0.99
6	18	2.3e-05	0.0024	18.7	5.3	1	23	631	653	631	653	0.97
7	18	1.4e-06	0.00015	22.5	5.8	1	23	659	681	659	681	0.98
8	18	9e-08	9.4e-06	26.3	2.7	1	23	687	709	687	709	0.98
9	18	6.6e-05	0.007	17.3	6.7	1	23	715	737	715	737	0.97
10	18	3.9e-05	0.0041	18.0	5.8	1	23	743	765	743	765	0.97
11	18	4.3e-07	4.5e-05	24.2	2.8	1	23	771	793	771	793	0.98
12	18	3.1e-05	0.0032	18.3	8.0	1	23	799	821	799	821	0.98
13	18	2.6e-05	0.0027	18.6	9.1	1	23	827	849	827	849	0.98
14	18	1.5e-05	0.0016	19.3	7.7	1	23	855	877	855	877	0.98
15	18	1e-05	0.0011	19.9	7.1	1	23	883	905	883	905	0.97
16	18	0.00015	0.016	16.2	0.2	1	23	911	933	911	933	0.97
17	18	0.024	2.5	9.3	5.1	1	23	943	965	943	965	0.98
18	18	0.014	1.4	10.0	0.3	1	11	971	981	971	984	0.87

Sequence Information

Coding Sequence: ATGGTAAATATTCACAACCATGTAAAAAAACCTACGAGCAGATCTACCACAGTGGTTGAGAGATCATTACCATCATCAACTATTCCTACTGACTTGCGAGTCAACACTACTGCACTGAATACTGTTGCATTGAGCGCCAGTGTGGCCAAGTATTGGGTATTGACTAATCTTCTAACAGCCCCCATACCACAGGTTTCGGTATATGGTCCATTAGGGACTggtagagatggacaaaaattAACTCAGGAAGCTATGCTATCACAACATGGGCTCATGCCAACAGAGCCTCTATTGATACCCCAACACTCCCAAATTCCTGTCAGTATTGCCACATCACAGGGTGTTGCAAATTTGGCCATTCCAGCTGGAGCTATGCATATTGACGGCCAACATAACCATGCATCCTTATCCCACCATTCTCAGCAGCAATCTGAGAATATATCTAATCAGCAGAATCAAATTAGAGAGATGTCCCAACATTCAACCCATTCTTCCCACTCTCAACACTCGCAGCAGCAGAATATGGTGCAAATTCAGGTACAGGATAACTTGGTGTCAGTCATAGAAGATAACAAAGAACATAAGGAGGCGATAGCTAATCATATCGCACAAGCGCATGCTCATGCGCAAGCGCAACTTCATATCAatgaaaatcatcacatgaACCACCAGGCTCTAACTGTACAACAGTTACAGCATCAAGTTCAACAAGTATTGGATAATGTGGTACGTCTTGAAAGTTCTGTGGAGAACAatcaaaatcaatccaacaATGATGTAcatatgaatgaaaatattcagatagtgaaagatgaaaaaaatcaatcgcAGCAGCAAAACTGCAAAATCATACCAGCCCAATTTGGCATTCAGAATGTGAAAGAAAACCTTATGGATGTTCGAACGTCTGATGGTTCAATTTTAAAGATATCGGCAAATGTTCAAGAACAAGAATTAGTTAAAACTTTAGGAGTGGAAATGGTACAAAATATGTACAAGGTTAACGTCGATGACCTCAACCAACTACTGGCATATCACGAAGTTTTTGGAAAACTACAGGGTGAACTACCTTCAAGTAGTACGCAAGGCATAATTCAAAGCACAGGCACCAGTGTAGGCCTGCAGAATCAGGGTTCAAATGTAACAGTGCAAACGAAAGATGAACAAGATGCGTCAACAAGCAATAATATTGAAAACGCACCTACAATTATCAATGGCAGCAATGTGTGCGATTTGTGTGGAAAGATGTTCCAGTTCAGATATCAGTTGATTGTACATAGgcGTTACCATACCGAGCGAAAACCTTTCACCTGTCAAGTGTGCGGAAAGGCTTTCTCCAATGCCCAGGAGCTTACTAGACACGGAAAGTGCCATTTGGGAGGTAGCATGTTCACTTGTTCTGTTTGTTTCCATGTATTTGCTAATAATCAATCTCTGGAGAGACACATGAAGAGACATTCCACCGATAAACCATACAACTGTTCGATATGTGGAAAATCATTTGCAAGAAAAGAACATTTGGAAAACCATACAAGTTTGGCTACTGAACAGCCATCCGGGAAAACCACGACCACAGGGGTTCTATCCTCTTGCACTCATTTATATCCCAAGGAGGCCGTTGATGTTATCAGCAAACCCGACGAGATCCTTGGGATACTTAGCTATTGCCTCCTGAGGTTCCAGAATTCCCCTCCCCATTTGGGAAGTTCTTATGCACACAATGTGTTCCTCTTCCGAGTCTGCTGCAAATTTCTAAAGAATAGGCATATTTTCAAAGAACATGGATGCCATACTGGTGAAACTCCCTACAGATGCCAGTATTGCGCTAAAACATTCACAAGGAAAGAACACATGGTTAACCATGTTCGCAAGCATACCGGAGAAACACCACACAGATGCGAGATATGCAAGAAATCGTTCACAAGAAAGGAACACTTCATGAATCACGTTATGTGGCATACGGGAGAAACTCCCCACCAGTGCAGTATCTGCAACAAAAAGTATACGAGAAAAGAGCATCTGGCGAATCACATGAGGTCGCATACGAATGACACGCCCTTCAGGTGTGAAATTTGCGGAAAATCGTTCACACGAAAGGAGCATTTCACGAACCATATAATGTGGCATACAGGGGAGACACCACATCGATGTGATTTCTGTTCTAAAACTTTCACTAGGAAGGAGCATCTTTTGAATCATGTTAGACAACATACAGGGGAATCTCCACATCGATGTGGCTTCTGTTCAAAATCTTTTACCAGAAAAGAACATCTCATCAATCACGTTAGGCAGCACACTGGGGAAACACCTTTCAGATGTAGCTATTGCCCAAAAGCCTTCACGAGAAAGGACCATTTAGTGAATCATGTGAGGCAACACACTGGGGAATCCCCTCATAAGTGTACATTTTGTACTAAATCTTTCACAAGAAAGGAACATCTCAACAACCACGTCAGACAGCATACAGGGGAATCGCCTCATCGGTGTCACTTTTGTTCTAAATCTTTCACTAGGAAGGAACATTTGACAAACCATGTTCGGATTCACACAGGAGAATCTCCTCATCGTTGTGAGTTCTGTCAGAAAACTTTCACCCGCAAAGAACATCTAACTAACCATCTTCGACAACATACTGGGGAAACACCTCATTGTTGCAATGTATGCTCCAAGCCCTTCACAAGAAAAGAACATCTCATTAATCATATGCGATCTCATACAGGAGAGAGGCCCTTCGCGTGTGGTGAATGCGGAAAATCCTTTCCATTGAAAGGCAATCTACTGTTCCACCAGCGGTCACATAACAAAGGTGCGCAGGCTGACAGACCGTTCCGTTGTGATTTGTGCGATAAGGATTTCATGTGCAAAGGACACTTAGTTTCTCATCGTAGATCACATAGTGTGGAAAGACCCCATGTGTGTCCAGATTGTGGGAAAACGTTTGTTGAGAAGGGTAGAGACGTGGTAATTGCTACTGTTATGCAAAAGCAGTAA
Protein Sequence: MVNIHNHVKKPTSRSTTVVERSLPSSTIPTDLRVNTTALNTVALSASVAKYWVLTNLLTAPIPQVSVYGPLGTGRDGQKLTQEAMLSQHGLMPTEPLLIPQHSQIPVSIATSQGVANLAIPAGAMHIDGQHNHASLSHHSQQQSENISNQQNQIREMSQHSTHSSHSQHSQQQNMVQIQVQDNLVSVIEDNKEHKEAIANHIAQAHAHAQAQLHINENHHMNHQALTVQQLQHQVQQVLDNVVRLESSVENNQNQSNNDVHMNENIQIVKDEKNQSQQQNCKIIPAQFGIQNVKENLMDVRTSDGSILKISANVQEQELVKTLGVEMVQNMYKVNVDDLNQLLAYHEVFGKLQGELPSSSTQGIIQSTGTSVGLQNQGSNVTVQTKDEQDASTSNNIENAPTIINGSNVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNAQELTRHGKCHLGGSMFTCSVCFHVFANNQSLERHMKRHSTDKPYNCSICGKSFARKEHLENHTSLATEQPSGKTTTTGVLSSCTHLYPKEAVDVISKPDEILGILSYCLLRFQNSPPHLGSSYAHNVFLFRVCCKFLKNRHIFKEHGCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCSICNKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGAQADRPFRCDLCDKDFMCKGHLVSHRRSHSVERPHVCPDCGKTFVEKGRDVVIATVMQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00020677;
90% Identity: -
80% Identity: -