Aobl006269.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014428.1:39964196-39964714[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-09 5.6e-06 26.5 0.0 2 42 13 52 12 54 0.91 2 2 7.9 6.6e+03 -2.6 0.0 6 14 133 141 133 142 0.83
Sequence Information
- Coding Sequence
- ATGAGGAGAAAGCTCGGTAATGTTCGTCAATACGAAGAGAACAACCTAAAAGAAGCGGTGCAAGCGGTGAGAAATAGTGGAAAATTAAGGGAAATTTGCCGGCAGTATGGGGTACCGAAGTCAACGGTTCAGGACCGTATTAAGGGTAGAGTTTCGGATTCAATTAAGACTATGGGACCAGAACCAGTCTTAACTATTGAATATGAAACCAAAATAGTAAAATGGGTAGAAGATCTGGCAAGGTGTGGGTTCCCAATAACTaaagaagaattgttgaaaacggtaaaaaaaattgtacagactgaaaatttgaaaacaccttTTAAAAATGACAGGCCTGGTCAAAAATGGTATGCCGGTTTTATGCGAAGATATCCCCAACTAACCTTAAAAAATGCAGAGGCGTTAGAAAAATATAGATCCCAAATAACGGAAAAATATATTCGATCGTGGTTCAAGGACTTGGAATCATTTTTGAAGGAATTGAATGCTACTGACATTTTGAACGACGTATATTAA
- Protein Sequence
- MRRKLGNVRQYEENNLKEAVQAVRNSGKLREICRQYGVPKSTVQDRIKGRVSDSIKTMGPEPVLTIEYETKIVKWVEDLARCGFPITKEELLKTVKKIVQTENLKTPFKNDRPGQKWYAGFMRRYPQLTLKNAEALEKYRSQITEKYIRSWFKDLESFLKELNATDILNDVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -