Aobl003379.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014427.1:43607922-43610022[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-09 5.1e-06 26.6 0.0 1 38 16 54 16 58 0.92 2 2 4.4 3.6e+03 -1.7 0.0 21 30 67 76 64 76 0.73
Sequence Information
- Coding Sequence
- atggtGCGGAATTACAAGATGAGAAGAACTAGATCCGCATTAATTGATGAAGATGATATGTCTTCGGCAGTAAAAGATGTTTTGGAAGGAAAATTGTTTTTCAGAAAAGCTGCCGCCCAATATCACATTAAAGTATCAACTTTGCAGAGTCGGGTGatgaaaataaaagagaaaccTAATAATGCTGGTACAATCCGAAAAACCATCACAATTTACAATATACCAAAACTTGCCAAGATAGCATACTTTGAAGCGTTCACTGCTAAAAACATCATAAGCGCGTTCACTTCGCCaggaatatggcctttcaatcGATTGGCTTTCAGTGATGAAGATTTCGCACCATTTGAAATATATACGTCCAGTAACACATACATTGATTGTCCTGTTCAGAGACCAGAATATTCTAATATGATTGATGATAATGCTAACGACATAtctgaaatgttggtttctagTGAGGAGATACGACACAATGTTCATACACAAGCAGTTTCTTATTCTCAGGCACAACCACTAGCAAGCGCTGACACAACTGACCTTGATTCTGCATTGGAAATTGAGGTGACACAGGTAACACCATCTCGTGTACTTGAAGATCAGTATCACGCTTCTGGGTCACAAGGAAAACCAGGTCATATTACACCAGCAATGATTCGGCCTTATCCTACAGTTGAGAAAAAGAGGAAGACGACAAGAGGAAAGCAACCAGGAATGTCTAGAATTTACACAGACACACCGGAGAAAAATAGACTGGAAGACTTGCAGAATGCGAAGCAGTTGAAGAAAATAGAACAAGAAAGAAAAGCAAAAGCGAGAGAGATgaaacgtagtttgaaaaaGACCTCATACCCTAAACCAAAAAGATCATTAAAGACTGTAGAAAGTAAGGCCTCTACCGCCAGAACTTCTAATGTGTACACATTTCCTGTTGATTTTACATCGTTTAATGTGCAATAA
- Protein Sequence
- MVRNYKMRRTRSALIDEDDMSSAVKDVLEGKLFFRKAAAQYHIKVSTLQSRVMKIKEKPNNAGTIRKTITIYNIPKLAKIAYFEAFTAKNIISAFTSPGIWPFNRLAFSDEDFAPFEIYTSSNTYIDCPVQRPEYSNMIDDNANDISEMLVSSEEIRHNVHTQAVSYSQAQPLASADTTDLDSALEIEVTQVTPSRVLEDQYHASGSQGKPGHITPAMIRPYPTVEKKRKTTRGKQPGMSRIYTDTPEKNRLEDLQNAKQLKKIEQERKAKAREMKRSLKKTSYPKPKRSLKTVESKASTARTSNVYTFPVDFTSFNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -