Aobl005008.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014428.1:17705217-17705933[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-16 1.2e-13 51.0 0.0 1 42 90 132 90 135 0.95
Sequence Information
- Coding Sequence
- ATGTTGCGGTTGAGCTTAGCCTCGCCATGCCTGCAATCCGTTAACCAACCACCCATCCTTCCAGGACTCAACTGGACCAATATGATGGACCCAACGGCATACAATACCGCAGGTCAATACAACAACTTTCCTACGAACGATGCGCTACCTCCAAACACCGTGGCGTTACCCGAATGTATGTTGAGCGTTAACAGGGGCGTTTCTCCCACCCCCTCTAGCGATGAAATACCGCAACATCAAAAGAAAAAACGAAGTGTAAACCCTCAAAGCGAGGAGAGATTCATTAAAGCGCTGGAAGCAGTGAGATTCGGCGGTATCGGGTTCTGTAAGGCGGCAAAAATGTATGGCGTGAACAATCGTACTTTATGGCTGGAATACAAGAAGCGTGGATATCCAAATTTCAGATTGAGtataaaaaacagaaaaaccGAAAATCAGAATGACGGCTTAAACATTAACGAGAATGACGTGGATAACACCAAAATTGATAAGATTTGCACCGAAGAAAATGAGCACATCGAACAGCAAGAATTCAAACTGGAACAACTATCTGATAATCCTGTCAACTTGGCTGGAGCTGTAGTTGGCTATTTCGATAATAAACACATCGATTTTACACAAATGATTCAAAGAATGAACTCTTCCAATTTGATAGGTGGTCAACAAAATACAAACATAGATAGTTATCCAACGGTAAATTTCGATCAAATCAATTGA
- Protein Sequence
- MLRLSLASPCLQSVNQPPILPGLNWTNMMDPTAYNTAGQYNNFPTNDALPPNTVALPECMLSVNRGVSPTPSSDEIPQHQKKKRSVNPQSEERFIKALEAVRFGGIGFCKAAKMYGVNNRTLWLEYKKRGYPNFRLSIKNRKTENQNDGLNINENDVDNTKIDKICTEENEHIEQQEFKLEQLSDNPVNLAGAVVGYFDNKHIDFTQMIQRMNSSNLIGGQQNTNIDSYPTVNFDQIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -