Arud002720.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- -
- Assembly
- GCA_003063815.1
- Location
- NJRL01000528.1:131310-135112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 1.1 10.3 0.6 3 23 263 283 261 283 0.90 2 13 0.76 83 4.4 0.2 1 21 288 308 288 311 0.82 3 13 0.00021 0.022 15.6 0.8 3 23 325 346 324 346 0.96 4 13 0.015 1.7 9.7 0.5 3 23 359 379 359 379 0.98 5 13 1.2e-07 1.3e-05 25.7 1.4 2 23 406 427 405 427 0.97 6 13 0.021 2.3 9.3 0.4 1 23 432 455 432 455 0.81 7 13 0.2 22 6.2 1.8 2 23 523 544 523 544 0.97 8 13 0.00078 0.085 13.8 2.1 1 19 553 571 553 573 0.96 9 13 0.37 40 5.4 0.2 5 20 590 605 588 606 0.92 10 13 0.015 1.7 9.7 2.4 1 22 610 631 610 631 0.95 11 13 2.4e-05 0.0026 18.5 1.0 1 23 657 679 657 679 0.99 12 13 0.055 6 7.9 0.0 1 23 743 766 743 766 0.98 13 13 5.9e-07 6.4e-05 23.6 5.9 1 23 771 794 771 794 0.98
Sequence Information
- Coding Sequence
- ATGAACGCGAATCTCTACACGATGGCTGCGGGCACCAAGTGGGACAAGGTCTGCCGACTGTGCTCGGAGGAGAGGAACGAGATGCTGCCCATCTTCGGCGACGAGGGCCTGCAGCGCAGGGTGGCGCAGAAGCTGCGCGCCTGCCTGCCCGTGCTTGTGTACACGTCCGATCCGCTGCCGAAGCAGATCTGCCAGTTCTGCGCGGCGAGGTTGGACGACGCGTACGAGTTCAGGGAGTACTGCCTGAACGTCTACAGGAGCATGCACGCCGTGTTGCTCAGGTACAAGACGGAGTCTGCCCAGATATTTCTCGACGCGATGAGGAACTCGTCGGACCCGTGCCAGGTGCAACTCTGCAAGGAAAAGTCCAGAGCTCCACCGGCGTTGGTTCCTTTATCAACTACCCTGTCCTTTGACGACTCGGCGACACCGATTAATCAAGCTAATCAGGACCATCTCCAAAGTGCCTGCATGGAAACCTTGTCTGAATTACCATGCGAGGTGGAAATCAAAGAGATGAATACGGACCCAATTTTGAGTGCCGAAACCGTTTGCGAACCGTTAAATAAGAAGCGCAAACTGTCGGAGATGTTTAGCACGGATATGCAGATAAATATGGAATCCACTCCTATATTTGACATGGAAGGGATGAGAGCTCTTAGGCCGGACTATCAAACCAAGAAGGATGAGAAACGAACCAGTATTCTGGAACAAGTGCTGACCGGCAGTCTGACGATGAATAATCACCAGAAGTTGCAATCCACAAAATTAACTTCCGAATGGCGGTGCGCACCATGCAACAATTATTACAAAACGAAAGATAGTTTAATGAAACATATGCAATTGCACTGCCCGCGTGTATATACTTGTAGAAAGTGCTCCGCGTCCTTCGAATCCGTTGAAATCTTAGCAAAACACGAAGCCAATAACCATTTAAAAGTCAAGTTGGATTTCACGGAAAACTTGAACGATTGTGATCAGTGCGACCGGCAATTCATAAGCTGGAAAATGCTGAAGCAGCACAGACTGCGCGATCATCTGGCCGAATTGACCGAGATCGGAAGTAATACGTGGTGTTCATTGTGCAATAgATTCTTCCCTACGATAGAATCTTATCAAAGTCACGTCCAGTTACATCAAACAGGCTCGACGGGGACAAAGATAGCGAGAGAGATTACACGAGAAGAGCAATACTATGAAAACGTAAAATCTCTCATGTGTCCCACTTGTGGAAAGGTTTGTACCCAGCAGAGTGCATTATCGAATCACATGCGCACTCATGAACCGAAGAAACACAAATGCGACATTTGCGGCCGATCATTCGGACTTTTTATACGCCTGGCTGGACACAGAATAACCGAGCATAATGAACAACCAATGATGTCACCAGTTTTGTCGGCGGTCGAACAAGAGGAGGCTCTAAATGCTGAGAGAGAAGCGAGGGAAGCAAGGGAAGCAAAGACTCGCGGTGTCAAGAAATCTTATACCGAGATGGAGAAGAATGACGTCCCGGTAGATGACGAATCTCTAGCAAAACACATTTCTGGTGGACTTAAAAACGTGGCAAGATGCGGCATTTGCTCACAATGGTTCAGCGATCACACAACAATGTTAACGCATCTTCAGACGCACTCGGACAGTTATTCCCATAAAAGTTACGTGTGTCAtgtatgtaaaaaatcatttaaggAACATTCGCGGCTGTTAAAGCACGAGGCTTGTCATAAACGCCTAACGCTCGATAATGCCTCACTGTACACATCCGCTGTTTGCAACAAATCATTCATGGATAAGGCGCATCAAAAGACGCACACGGTGGATAAAACCTATCACTGTGCGAAgtgtaataaaatctttttcaaagAAGTATCGCTACTCGCCCATCAATGCACGGGCGGAGCACCGCTTGGAAAGAAAGTCACCGCGAAGTCTCGGCAGAAGACGTCGCCTTATGTTGGCAACAAGACATACAAGTGTTCTAAATGTGATGCGACTTTTGCGAGCTCGCAGTCAAGAAACGCTCACATGAAAATGCACGCCGAGTACATGCGTGGCAGTACGGCGCAAACACGCGAGATTAAAGTCAAAGCGGACGACGAACCGATGCCAAAATTGCGTCCGGAGACACTGGAATACGTATCTCCTATCGAGCCGAAGATTGAAATTAACGAGCAGAGTACACCACCTCCACCTCTTAAACGGACCCTCATTAAAACTGCTAGCGGATATCGCTGCGGTGTATGCCAGTCACCGTTTGTGTTTAGGGAGCTAGCCGTGGCGCATTTGAGATCCGCACATCCTGTGATGCCATATCAGTGCCCTTATTGCAAAAAACGCTTCACGACGCAGTACACGTTTACCCATCATATCAAGACAGAGCATCCCGATGAGCCTGAGAAATGA
- Protein Sequence
- MNANLYTMAAGTKWDKVCRLCSEERNEMLPIFGDEGLQRRVAQKLRACLPVLVYTSDPLPKQICQFCAARLDDAYEFREYCLNVYRSMHAVLLRYKTESAQIFLDAMRNSSDPCQVQLCKEKSRAPPALVPLSTTLSFDDSATPINQANQDHLQSACMETLSELPCEVEIKEMNTDPILSAETVCEPLNKKRKLSEMFSTDMQINMESTPIFDMEGMRALRPDYQTKKDEKRTSILEQVLTGSLTMNNHQKLQSTKLTSEWRCAPCNNYYKTKDSLMKHMQLHCPRVYTCRKCSASFESVEILAKHEANNHLKVKLDFTENLNDCDQCDRQFISWKMLKQHRLRDHLAELTEIGSNTWCSLCNRFFPTIESYQSHVQLHQTGSTGTKIAREITREEQYYENVKSLMCPTCGKVCTQQSALSNHMRTHEPKKHKCDICGRSFGLFIRLAGHRITEHNEQPMMSPVLSAVEQEEALNAEREAREAREAKTRGVKKSYTEMEKNDVPVDDESLAKHISGGLKNVARCGICSQWFSDHTTMLTHLQTHSDSYSHKSYVCHVCKKSFKEHSRLLKHEACHKRLTLDNASLYTSAVCNKSFMDKAHQKTHTVDKTYHCAKCNKIFFKEVSLLAHQCTGGAPLGKKVTAKSRQKTSPYVGNKTYKCSKCDATFASSQSRNAHMKMHAEYMRGSTAQTREIKVKADDEPMPKLRPETLEYVSPIEPKIEINEQSTPPPPLKRTLIKTASGYRCGVCQSPFVFRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126946;
- 90% Identity
- iTF_00126946;
- 80% Identity
- iTF_00126946;