Basic Information

Insect: Aphaenogaster rudis
Gene Symbol: -
Assembly: GCA_003063815.1
Location: NJRL01000251.1:102815-108089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.37 40 5.4 6.6 2 23 314 336 313 336 0.97

2 18 0.14 15 6.7 3.9 1 23 385 407 385 407 0.97

3 18 0.17 19 6.4 1.3 1 23 456 478 456 478 0.98

4 18 0.0073 0.79 10.7 0.1 1 20 526 545 526 547 0.92

5 18 0.0005 0.054 14.4 1.4 1 23 587 609 587 609 0.98

6 18 0.00051 0.055 14.4 0.4 1 23 656 678 656 678 0.96

7 18 0.00057 0.063 14.2 0.1 1 23 684 706 684 706 0.97

8 18 1e-05 0.0011 19.7 0.4 1 23 750 773 750 773 0.96

9 18 0.00036 0.039 14.8 2.6 1 23 779 802 779 802 0.97

10 18 5.2e-06 0.00057 20.6 1.0 2 23 810 832 809 832 0.97

11 18 0.00015 0.016 16.0 0.0 1 23 840 862 840 862 0.93

12 18 0.076 8.3 7.5 0.3 1 20 922 941 922 941 0.97

13 18 8e-05 0.0087 16.9 0.2 2 23 961 982 960 982 0.97

14 18 4e-05 0.0044 17.8 0.8 1 23 995 1017 995 1017 0.96

15 18 1.7e-05 0.0019 19.0 3.7 1 23 1039 1062 1039 1062 0.97

16 18 0.0013 0.14 13.1 1.6 2 23 1122 1144 1121 1144 0.96

17 18 0.0018 0.2 12.6 1.9 1 23 1166 1189 1166 1189 0.93

18 18 0.0068 0.74 10.8 0.2 2 23 1281 1303 1281 1303 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.37	40	5.4	6.6	2	23	314	336	313	336	0.97
2	18	0.14	15	6.7	3.9	1	23	385	407	385	407	0.97
3	18	0.17	19	6.4	1.3	1	23	456	478	456	478	0.98
4	18	0.0073	0.79	10.7	0.1	1	20	526	545	526	547	0.92
5	18	0.0005	0.054	14.4	1.4	1	23	587	609	587	609	0.98
6	18	0.00051	0.055	14.4	0.4	1	23	656	678	656	678	0.96
7	18	0.00057	0.063	14.2	0.1	1	23	684	706	684	706	0.97
8	18	1e-05	0.0011	19.7	0.4	1	23	750	773	750	773	0.96
9	18	0.00036	0.039	14.8	2.6	1	23	779	802	779	802	0.97
10	18	5.2e-06	0.00057	20.6	1.0	2	23	810	832	809	832	0.97
11	18	0.00015	0.016	16.0	0.0	1	23	840	862	840	862	0.93
12	18	0.076	8.3	7.5	0.3	1	20	922	941	922	941	0.97
13	18	8e-05	0.0087	16.9	0.2	2	23	961	982	960	982	0.97
14	18	4e-05	0.0044	17.8	0.8	1	23	995	1017	995	1017	0.96
15	18	1.7e-05	0.0019	19.0	3.7	1	23	1039	1062	1039	1062	0.97
16	18	0.0013	0.14	13.1	1.6	2	23	1122	1144	1121	1144	0.96
17	18	0.0018	0.2	12.6	1.9	1	23	1166	1189	1166	1189	0.93
18	18	0.0068	0.74	10.8	0.2	2	23	1281	1303	1281	1303	0.94

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATCGAGAACGTGGAGAGTGTGTGCAGACTGTGCCTTTCCACGGACGAGCCTCGATCCTCGGTGTTCGCGACgcacgaggaggaggaggaggtggagaagAAGGACTCTGGCGTGCCGCTGGCCGCCAAGATTCAGGCCTGCTTGTCGATCCagatttcagCAACCGATAAGTTGTCCACGCTGATATGCGCAAATTGCGTGAAAAATGTGAATCAATGGCATACTTACAAAGAGTCGTGTCTGCGCTCCCAGGAAAAGCTACTAGAATGGCTGGCAAATCAATTGCAATCAAATCCTACGGTTGCAACGATCAAGGATGAACCAATGGACTTGGATTATGAAGATAATGTAGAGATTATCTCAGAGATCACCAATAATTTGGAACAATcaCATCCACCAACTCAGACAGTGGAAAACGATGAATCTAGTAATGAGAAGGTACAAGAGGTAACAGATAATAACGATGCGAGTAATGAGAAAATGCAAGAGGTAACAGATAATAACGATGCGAGTAATGAGAAAATGCAAGAGGTAACAGATAATAACGATGCgagtaatgaaaaaatacaagagGTAACAGATAATAACGATACGAGTGATACTAATAAAGACCCTGAACCAATTTCGTCTGCAGTGGAAAAGGAAACTGACAAGGAAGAAAATCAAACAGATCAGCAAGATGTAATTCTATGTTCTGTTAAAAGCGAGCCACAGGATGATGACGATAGCGACTGTACCATAGAAGTAGAATCGAATAGTAGTGAATTGCTATTGAATCCTATGGCAGTCGCCGAGACAGAGGACACAGTCATGGAGGCTGATTCCACGCAGAAGTCTAGCGCGGCTGGCGCACCACCGAGGAAGAAATTGAGACGCGGTCCTCACACTCACTTCAGAGGAACACGTGTTTTTAAGCAGAAGTGCACGCACTGCCAGATATTCTTGCATTCTAAGTACACATACATAAAGCACATGCAGCGGTTCCATAGTAAAGAAAACGGCATCGAGAATTCAGAGTTGCAGAACGATGAGGAGGAGATGATCGAGGATCTGGAAGATGAATTGGTCAGTATGGAGAAGGACTCACCGCTGACGCAAGTCCAACAGGACATTATTAGCCAACTGAAAACTTTTTCATGCTACTCTTGCGAGCAGTCGTTTAATGATCGACGCAGCACTCTTTCTCACATACGTCATCATCTGCCGGATCTGAGGCCGTACACGTGTATCGCCTGCCTGACAGAATTCCCTGATCGAGCGCTGTACCAGGTACACTGCGCAGCTTCCTTTGAATGCGCCATGAAGATCGCCCTAGTCATACCGAAGCACGGTGACGAACGATACTTTACATGCAACATGTGCCTGCGCTCAATGAAGGGTAGAAAGGAGTTGCTCAGTCACTTGTCGAAGCACTCTGACAAACAATACGAAGAAATGATAGGACCGACGCGAGCCCCGCCCAAACTAAAGCCGATGGCGCCGTTACCCTCTACGAAAAACAGTATCCCCAAGATGAGTATCGGACCTTACAAGAACGGCGATCCAGCACATAATCACGCTTGCGATCTATGCGGCATGATCTATCGATACCGACCCAATTTGATTAAGCACAAAGAGATGTGCATGCAGCTGAAGCCGGAAAACAGAACATTGTACAAATGCGTGCATTGTTCCATGACGTACCTTGTGTTTAAGAAGTTTCATTATCACATTACGGCCGATCACAAGAAGAAAGATTTTACTTGTCCTATGTGCTATTCCAAATTCCGATCGCCTAGTGATTTCCTGACCCATTACGAGACTCATCGCGCGACAGTGCAAGACAATCGGCAAATGCAGCATGACAGTACCTCGCAGAACGCGGTTCAAACACCATTGAAAGAACGTAATGCTTTCGAAGTAAATGCCAAGTCAAGAACGAGCTCGCGAATGTCAAGTCAGAAGTACAGCTGTCCTCTTTGTGCCCAGGAGTTTTCCACGAAGAACGAGCTGAACGAGCACCGGACCCTCCATCTTAAAGTAAAGATATACTCGTGCGCCATTTGCCGCAGTATGTTCAGCAGCGCTGGTGCCTTGGAGATCCATATGAAGGATCACGGTATCGAGGACCCGAACGAAAGGAACGCCAACATTTCCTGCGTGGAATACGGCAGTTTGGATGAGGACGTGAGGATTGAGAAAGATTCGATAAATACCAGTGCCATCTCGGATCCTGGTACACAGATTCATGAATGTGGCGAGTGCGGTAAGGTATTATCCAGTTACGCTAATCTCCGGCGACATACTAAAATTGCTCACCGAAACTCTAAGACGTACGAGTGTAACGAGTGCTCGCGAATGTTTATGCGTAAAGATCTGTACGATCATCATATGCAAATCAAGCACAATTGTAAGAAGACAATGCTGCAATGTCCGCAGTGTCCTAAGAGTTTTGTCTTCCAATCAAACTTCACTTATCACTTCCGTACTGCTCATCTTGAGAAATCACAGAACGGTTACGCCTGCGATATCTGCGGCAAAGTTTTCGTTGAAGAAGCGTCTTTGAAAATACACAGGGGCTGGCATAATCGCGCCAATTCGCGTCTGAGCACTCGATTTATATTGGGCAATCAGAAGGCATCCAATGAGAAGCAGAAGGAATCCAACAGTGTCGCGTCTGGTGAGAATTCAGAACGGCCAGCAAGAGCACGGAAGTCTTTCCCTAATCCTCCACCTCAATCACCAGCGACAACCTCGGGAAATTTCCAATGTCAAGTATGTAATGACAAATTCAACGATGTCACAGAACTGAGGACTCATCTGTGGGATGTTCACTGCGCCCGCAACAAACCGGAAAAGAGTTTCTCTATCGACGAGCTTCAGTGCGAACTTTGCACGAACGTTTTCCCTGATCAGGAAACCTTGACATCTCATATGCGATGGCACAAGGCCAATCCTATTCTCAGTGACATACAAAAGGTGTTTGCCTGCGATGTATGCGGCAAGTCCTACAGTTCGAAGAAGGTTTTATGGAAGCACAAGAAGCTTCACAAGGCTACCGTTGTAGCCTCGATCAAGTTCCAATCTTTGGCCAGAAAACCGATGGCTACACAGTTCCAATGTAATTTCTGCCGCAAAGTCTTTTCGAGCAGTCAGTCTCTGCAACGACACAAACTCACCTTCCACAGTGAGTCGCAGAATCAACAACGTGCTCGGCAACAGCTGTACAATACCGATCGATTACTGTCGTTTGAAGAAGAACCGAGGGCAAAGCGCTTAAAGGTCGAAATCGAAAATGACGATTCACAGACCAAGCTATCGCCTTTCGCCATGGACTTTGCCGGCGAAAAAAGAAAACCGGTCATGTGTCACGTTTGCAAGAAAATGTTCCCCAATATGAGTGTGCTGTACAAGCACAAGCAGACAGTCCACAAGACCGGTGCAAAAAAAGATTCGATACCTCAGTGCATACCGATGTCGACTCAGGATGGCAAGTTTTCATGCAACATCTGCTTCAAGGAATTCCCCCGTCTGTCGAGACTGCGACAGCATTTTACGATCAAGCACAAGAAGACGTCTGGAGCCGGCAGCGTCTCGAATAATAACAAATTGCTCCCGAAACCTGAGAGTAAACCGCGACCAAAAGAGTACGAAGTACAGGCCTATCACAATAACGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCATGTTTTCAACAAGGAGTCCATCATGAGCCATATCACCAACGTGCACAATACAGTGTATCAAGCCGACAGCAAGACGTTCCACAGGGAGGTCAATCTGGTCACTTATGTAGTGAAGGATGCAATCAGAGCTACCTGCCCGCTATGCGACGTCAAGTATCCTAACAACAGGGCTCTGAAGATACACTACGTTAAGTTCCACGATAATGCCGATTAA
Protein Sequence: MDEDVVEIENVESVCRLCLSTDEPRSSVFATHEEEEEVEKKDSGVPLAAKIQACLSIQISATDKLSTLICANCVKNVNQWHTYKESCLRSQEKLLEWLANQLQSNPTVATIKDEPMDLDYEDNVEIISEITNNLEQSHPPTQTVENDESSNEKVQEVTDNNDASNEKMQEVTDNNDASNEKMQEVTDNNDASNEKIQEVTDNNDTSDTNKDPEPISSAVEKETDKEENQTDQQDVILCSVKSEPQDDDDSDCTIEVESNSSELLLNPMAVAETEDTVMEADSTQKSSAAGAPPRKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYTYIKHMQRFHSKENGIENSELQNDEEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQSFNDRRSTLSHIRHHLPDLRPYTCIACLTEFPDRALYQVHCAASFECAMKIALVIPKHGDERYFTCNMCLRSMKGRKELLSHLSKHSDKQYEEMIGPTRAPPKLKPMAPLPSTKNSIPKMSIGPYKNGDPAHNHACDLCGMIYRYRPNLIKHKEMCMQLKPENRTLYKCVHCSMTYLVFKKFHYHITADHKKKDFTCPMCYSKFRSPSDFLTHYETHRATVQDNRQMQHDSTSQNAVQTPLKERNAFEVNAKSRTSSRMSSQKYSCPLCAQEFSTKNELNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGSLDEDVRIEKDSINTSAISDPGTQIHECGECGKVLSSYANLRRHTKIAHRNSKTYECNECSRMFMRKDLYDHHMQIKHNCKKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGNQKASNEKQKESNSVASGENSERPARARKSFPNPPPQSPATTSGNFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKSFSIDELQCELCTNVFPDQETLTSHMRWHKANPILSDIQKVFACDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMATQFQCNFCRKVFSSSQSLQRHKLTFHSESQNQQRARQQLYNTDRLLSFEEEPRAKRLKVEIENDDSQTKLSPFAMDFAGEKRKPVMCHVCKKMFPNMSVLYKHKQTVHKTGAKKDSIPQCIPMSTQDGKFSCNICFKEFPRLSRLRQHFTIKHKKTSGAGSVSNNNKLLPKPESKPRPKEYEVQAYHNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKTFHREVNLVTYVVKDAIRATCPLCDVKYPNNRALKIHYVKFHDNAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00129189;
90% Identity: iTF_00129189;
80% Identity: -