Arud017025.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- -
- Assembly
- GCA_003063815.1
- Location
- NJRL01000199.1:299934-303779[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0071 0.77 10.7 0.1 1 20 62 81 62 83 0.95 2 13 4.3e-07 4.7e-05 24.0 0.3 1 23 160 183 160 183 0.97 3 13 6.3e-05 0.0069 17.2 3.9 2 23 190 212 189 212 0.95 4 13 0.00095 0.1 13.5 3.6 1 21 218 238 218 243 0.94 5 13 2.1e-07 2.3e-05 25.0 2.4 1 23 250 272 250 272 0.98 6 13 3.4e-05 0.0037 18.1 1.5 2 23 282 303 281 303 0.98 7 13 0.00036 0.039 14.8 0.5 2 23 310 331 309 331 0.97 8 13 2.8e-06 0.0003 21.5 2.3 1 23 337 359 337 359 0.99 9 13 5.4e-06 0.00059 20.6 1.8 1 23 365 387 365 387 0.94 10 13 5.1e-05 0.0056 17.5 1.1 1 23 393 416 393 416 0.94 11 13 2e-05 0.0022 18.8 0.6 1 23 422 444 422 444 0.97 12 13 2.7e-07 2.9e-05 24.7 1.4 1 23 450 472 450 472 0.99 13 13 2e-05 0.0022 18.8 1.5 2 23 479 501 478 501 0.95
Sequence Information
- Coding Sequence
- ATGGCAGAAGAGATGGAGAGGATAGAGATCGTGAAGATTGAGGAGTGTAATATACTAATAGAAAACGAAGCCACAGAGATCTTATTTGATGGGAACATCCCACAGGAAGAACCTATAGTTGTGGCCAGTAGACCAGCCACTGATAATGAGAAagACGACCTGATCATTTCGGTTGTAACTGATTATCAATGCGTAACATGTCAGCGTATATTCCAGTCTGAGGATATGTTGCTGAAACATGTAGACATGTGCAGAGAAGAAGATGATTCGATCAATATTATGGGGCTTGATAATACGACAAGTTATGATtcagaagaggaggaagaggatgaGGACGATCCATTAAGTTTAAGTGCTGAAGATTCAGATTCTAAGAGCCAAAAGAATAACAATGAAAAACCTGTAATTAAGCCCGTGCCCGAAACACAATGTCATTGCTGTGCGGAAGATTTAAAGACGGCGCATAGCGGTGGACAGTTCAAGTGCTCAAATTGCGACCTCAGTTTCAAGAATAAGGCATCTTTGGAAAGACACATTATAGTCATACACTGGAAGTGTGACTCGTGCACATGTAACGAATGCGGCTCTTCCTTTCGTGATAAGAAAGCCTTGAATAAGCATCGTTATACAACACATGAAGATCGCAAAATTTTTAGATGTGAGCCTTGCGACACTTATTTCTCCCGGAGCTATCACTTAAATCGGCACATAATGCAGTCTGGTTGTCACGGTAGCATACGTAATACTTTCAATTGTCAAGTTTGCAAAAAAGATTTTACACGTAAAGATAATTTGCGGGAACACTTGCGTACTCATGCGGGAACACCCCAAAGACAAAAAAAGAAGTGTAAATATTGCCCGAAGGAATTCTTTACGAATCAACAATTGTTGGTACACGAGCGCATGCACACGGGAGAGCGACCAGTCCAATGCGATTTATGTCCGAAGACATTCCTGTCGTCGCTTGCGCTAAAAAAGCATCGTCGCGTACACACCGGGGAAAAGCCATTCGAGTGTAAATACtGTCAGAGGAAATTTGCTGCTCGTGAAACGCTGAATCGTCACCAACGGACGCACACGGGTGAGAAACCGCATGTGTGTCAGTATTGTGGCAAATCATTCATACAAGCAGCGCAATTAAGGGCACACGTGTTCCATCATACTGGAGAGAATGGTTTTTATTGTGACGTGTGCGACAAGGCATTTAATCGAAAGGCGCGTTTGAATATCCACAAGAAATTCGTACACGAGGGAGCAATTCCATTCACGTGTGAAGCCTGCGATAAAGGTTTCACGCGAAGGGAAGATTTGGTGAAACACAAGCAGTTACACACTGGTCTCAAACCGTTCAAATGCAACAAGTGTCAGAAAGCTTTCTCGGCAAAGTCATCGTTGCAGGCTCATCTCAACACCCACAGACGCGAACCACCCCAGTCGTGCGTTGAATGCAACAGAGTGTTCATCCGGCAAGATTGCCTGATGCGGCATATTCGAGCGAAGCATCGGGAACTGTTGGAGGACGTAATGAACGAGGTTGAAAAGAAGCATTTGCAAACGCAGTTGTTCAAAATCGCGTCGATTGCCGATGCCAAAACGAAAACCGGTGAATCCAAAAGACTCTCCACCGATGAGTTATTGAAGGCCATTATAGACCTTTTGAGGATACTTATCGACGAGGAAACGTtacaaTTGTTTGGTTGGCCGGAGGCTCCGATACAAGACATCCTCGAAGCCGTGATCAGAAGATGCGGACATGATCCAGTAACGTCGGAGTCCAACGTGATGTTTACCGACAGGCTACGACAAAACATCAAGCTTCTGTTCTCCGTTGTCGGCGACATGGTGAACGACAAAACGGTGAAGTCTCTCTTGACAACGAAAACGGTAGACGATGTCATCCTCCACGTTTTAGAAATATCTAACCGAAAGTAA
- Protein Sequence
- MAEEMERIEIVKIEECNILIENEATEILFDGNIPQEEPIVVASRPATDNEKDDLIISVVTDYQCVTCQRIFQSEDMLLKHVDMCREEDDSINIMGLDNTTSYDSEEEEEDEDDPLSLSAEDSDSKSQKNNNEKPVIKPVPETQCHCCAEDLKTAHSGGQFKCSNCDLSFKNKASLERHIIVIHWKCDSCTCNECGSSFRDKKALNKHRYTTHEDRKIFRCEPCDTYFSRSYHLNRHIMQSGCHGSIRNTFNCQVCKKDFTRKDNLREHLRTHAGTPQRQKKKCKYCPKEFFTNQQLLVHERMHTGERPVQCDLCPKTFLSSLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCDKAFNRKARLNIHKKFVHEGAIPFTCEACDKGFTRREDLVKHKQLHTGLKPFKCNKCQKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKKHLQTQLFKIASIADAKTKTGESKRLSTDELLKAIIDLLRILIDEETLQLFGWPEAPIQDILEAVIRRCGHDPVTSESNVMFTDRLRQNIKLLFSVVGDMVNDKTVKSLLTTKTVDDVILHVLEISNRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423083;
- 90% Identity
- iTF_00126150;
- 80% Identity
- -