Arud012420.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- -
- Assembly
- GCA_003063815.1
- Location
- NJRL01001881.1:3026-3466[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-08 1.2e-05 25.4 0.0 2 28 11 37 10 41 0.95
Sequence Information
- Coding Sequence
- ATGGCCGCACctaaaaaaggaaaatgggATAAAGAGAATATGAAAAAGGCTGTTGATGATGTTCTGAGGGGGAAATTCAGTATTAGAAAAGCAGCTGGACACTTCTCTGTAAAGCTTCCCAAAAGCTTGGCAGACCATGTTTTTGCTTTTAAAAAGGGGAAAACAATTCAAAAGACACcttcaataaatagatttaaaaaaacgttcaacaatgagttaaaaaataaactcaAGCATCTCAAACATCTGGACAATTGTTTCTTACCCGTgaataaaatcgaatttttaaCCTTAGCTTATGATCTTGCTAAGCACTTAAAATTACCACACCAGTTCaacaaaacaaagaaaattgcaagaaacaaattttattgcgGATTCATCAGGAAGAATTTTATTTGCGCTGTGCTCAATCAACAAGTCTTTAAAGAGGAGGACTGA
- Protein Sequence
- MAAPKKGKWDKENMKKAVDDVLRGKFSIRKAAGHFSVKLPKSLADHVFAFKKGKTIQKTPSINRFKKTFNNELKNKLKHLKHLDNCFLPVNKIEFLTLAYDLAKHLKLPHQFNKTKKIARNKFYCGFIRKNFICAVLNQQVFKEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128116; iTF_00125836; iTF_00127373; iTF_00125842; iTF_00128115;
- 90% Identity
- iTF_00128116; iTF_00125836; iTF_00127373; iTF_00125842; iTF_00128115;
- 80% Identity
- -