Arud008895.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- -
- Assembly
- GCA_003063815.1
- Location
- NJRL01001072.1:1-475[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-10 2.7e-07 30.6 0.0 1 35 18 53 18 55 0.95 2 2 2.6 2.3e+03 -1.2 0.0 17 23 142 148 137 150 0.82
Sequence Information
- Coding Sequence
- ATGTCGAACACATCAGGAGTGGCTAAACCAGGGTATCGAAGGTTTAAATACACCGAAGAGGACTTACAAAACGCTTTGCTTGAGATACGAAACAAATCATTAACATTATCTGGAGCATCAACCAAATATGGAGTACCAAAAAGAACtcttcataataaaatatgggACAAGGTATCAGGAATTCGAAAAATGGGCCCGCGAACCATACTATCGGCAGAAGAAGAATCAAAATTGGAAAAGTGGATTATCGATAAAGCAAAAGTAGGCTTTCCAATGCATCCTGAAATGGTGAAAGATGCTGTACGAAGTGTTCTGAGGGAAGATGGTCGAGAGAATCCATTCGTCGATGATAGGCCTGGGAAAAAGTGGCTGTCTCTGTTTCTCAAACGGAAACCAGAAATAGTCAAACGAAACACTGAGATTATTTCTCAGGCGAGAGCGGCTGTAACGGAAGAAAAAATACGAGCTTGGTTCG
- Protein Sequence
- MSNTSGVAKPGYRRFKYTEEDLQNALLEIRNKSLTLSGASTKYGVPKRTLHNKIWDKVSGIRKMGPRTILSAEEESKLEKWIIDKAKVGFPMHPEMVKDAVRSVLREDGRENPFVDDRPGKKWLSLFLKRKPEIVKRNTEIISQARAAVTEEKIRAWF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -