Arud013145.1
Basic Information
- Insect
- Aphaenogaster rudis
- Gene Symbol
- -
- Assembly
- GCA_003063815.1
- Location
- NJRL01003807.1:5090-5533[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-13 1.2e-10 41.3 0.0 3 44 20 60 18 61 0.92 2 2 9.9 8.6e+03 -3.0 0.0 19 26 98 105 98 105 0.78
Sequence Information
- Coding Sequence
- ATGCCATTTCGATACAAACCAAAAGAGGGTACTACCCGACGACATGAATTCAATGAGCAGGCGTTGAAGAATGCGTTAGAAGATATTGAAAAGGGCATGTCTATAAGAAAAGCTGCGATCAAGTATGATATAAATGGAACTACATTACGCAGATATATAAAGGACGGAAACaaactgaaaaaaatagaaattaaaggaAGTCAATACAAAGGTTCTCAAATTTTTACGCTACAAGAAGAAAAATCACTAGTCAATTACTTGTTAACTTGCAGTAAAATAAACTATGGTTTGACCAGAAAGGCCGCCATGAGGTTTGCATGCGAATATCCACAGACTAATTCAAAGATATTACCGAAAAGCTGGTTGCAAGACAACTCTGCAGGGAAAGACTGGTTTTGTGGCTTCCTCAAAAGGAATCCTGAGATAAGTTTGAGGACACCATAG
- Protein Sequence
- MPFRYKPKEGTTRRHEFNEQALKNALEDIEKGMSIRKAAIKYDINGTTLRRYIKDGNKLKKIEIKGSQYKGSQIFTLQEEKSLVNYLLTCSKINYGLTRKAAMRFACEYPQTNSKILPKSWLQDNSAGKDWFCGFLKRNPEISLRTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00127366; iTF_00128108; iTF_00128886; iTF_00126621;
- 90% Identity
- iTF_00127366;
- 80% Identity
- -