Apic016800.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- stc
- Assembly
- GCA_003063865.1
- Location
- NJRM01001335.1:1-3545[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 1.4e+04 -3.3 1.1 15 19 186 190 185 190 0.82 2 15 0.16 2e+03 -0.6 1.2 4 10 219 225 218 228 0.82 3 15 3.1e-06 0.039 14.4 12.4 3 18 235 250 234 251 0.93 4 15 3.3e-09 4.1e-05 23.9 16.8 1 18 287 304 287 305 0.98 5 15 9e-06 0.11 13.0 11.3 1 19 343 361 343 361 0.92 6 15 0.74 9.2e+03 -2.7 0.7 5 10 390 395 390 395 0.94 7 15 0.00018 2.2 8.8 11.9 4 18 408 422 401 423 0.86 8 15 2 2.5e+04 -4.2 1.6 5 10 452 457 452 457 0.90 9 15 0.05 6.2e+02 1.0 12.2 1 11 463 473 463 485 0.88 10 15 1.7e-09 2.1e-05 24.9 11.6 1 19 490 508 490 508 0.98 11 15 0.99 1.2e+04 -3.1 0.5 6 10 537 541 536 541 0.86 12 15 1.8 2.2e+04 -3.9 7.7 10 19 555 565 553 565 0.78 13 15 2 2.5e+04 -4.7 0.6 9 11 583 585 583 586 0.74 14 15 7.9e-07 0.0099 16.3 9.7 1 16 601 616 601 626 0.88 15 15 2.3e-06 0.028 14.9 12.4 1 19 633 652 633 652 0.97
Sequence Information
- Coding Sequence
- TCTAATAGTCAGGAAAGTAAGGCTGTCGTTGAGGAGAGTCAGGAGGATGACTCGTCGTCGATGTACGAGGGTAACGATTCAGAAAATATGTCGTCGAAAATTCCTGAGGCACAACGAAACGGTAGACCTAAGCGATTCGCTAATGCGTccaattatcaatataaatataatttagacgATATGCAATCCGAACCTAGTGCCAGACGTAAAACAGCAACGACAGCAAAATATGCGCCGAGAAGAAACAATGAGACAACAGCAAGTTACAAAGAGAGAAAAGCGGAAAATTGGAGAGATAGAGCGGAAAGTAACGAGACGGCGCGTACACCGCAGGGAAAAAATCTGAGGAAAAAATATGACTTTGATGACGACGCGAGTCAAAGGGAAAGATTAACCGAGCAGTTGAACAAGGGAACGTTAGAATGTCTGGTCTGTTATGAGCATATCAAGCAAAGCGATTACGTTTGGTCTTGCAACAACTGCTATCACGTGTTGCATCTGAAGTGCATCAAAAAATGGGCCAAGTCATCTCAGAGCGAGAATAATATTTGGAAGTGTCCGGCTTGTCGGGACGTCAGTTTTCTCGTGCCTGAGGATTACTTCTGCTTTTGCCGAAAGATGAAGATGCCGGAGTGGAATCGCAGGGGCGTCGCGCACTCGTGCGGCGAGATCTGCGGCCGGCATCTGTCGAAGAAGAATTGCACGCACAAATGTACCCTGCTCTGCCATCCTGGCTCCTGTCCACAGTGTATAGCGATGGTAACCAAGTATTGCGGATGCGGGAGAACGTCGAAGATGCTTCTGTGTAGCACTCATCAATTGTTAATATGCGATTCGATATGTGGGAAAGATCTGTCGTGCGGCAAGCACACCTGCCAAAGAAAGTGCCATCAAGGGGAGTGTGGACCTTGCGATAAAGTTGTGCGACAAAcaTGTTTTTGTAGTAAGAAAACTCAGGAGGTACCCTGCCGAGCCAATGTCGCAGATACATATTCCTGTGATAATATTTGTAACAAACCGTTGGACTGCGAGAAACATTATTGCCAGAAAGTCTGTCATCCGGAGGCCTGTGACCCCTGTTCCTTAACGCCCGAAAGAGTTACGATGTGTTGTTGTGGTCAAACGCCGTTaacggagaagagagagagctgTATGGACCCAGTGCCGACCTGCGATAAAATCTGCTCGAAGCGCTTGAAATGTGGCCAGCCTAGTAATCCGCATATCTGCAAGGCTCCGTGTCACGTGGGGCAATGTTCGGAATGCGACTTGAACACCGACGTCAAGTGTCGATGCGGTAACATGGACCGGGAGATCGCTTGTAGAGACTTGACGAGCAAGGCCGACGACGCGCGGTGCGAAAAACGCTGCAAGAAGAAGAGATCCTGCGGTAAGCACAACTGCAATCAGTCGTGCTGCATCGACATCGAGCACATCTGTCCGTTGCCGTGTTCGAAAACCTTGAGCTGCGGTCGGCACAAGTGCCAGGAGAGATGTCATATGGGAAGATGTTCGCCTTGTTGGGAGAGCAGCTTCGAAGAATTGTACTGCGAGTGCGGCGCCGAGGTGATTTATCCGCCGGTACTTTGCGGTACGAGGAGGCCTGCCTGCAACCGACCGTGTTCGCGCGAGCATGTATGCGATCATGAGGTATTGCACAATTGTCACAGCGAACCCTCATGTCCGCCTTGCAGCGTCCTGACTCAGAGATGGTGCCATGGCAAACACGAACTCAGAAAGGCCGTACCGTGCCACGTGAAAGAGATCTCGTGCGGTCTGCCGTGCAACAAGCCGTTGGCATGTGGACGTCATAAATGTATCACAATGTGCCATGCCGGATCATGCGAGAGACCCAGACAACAGTGCACGCAACCTTGCATCACGATGAGGGAATTGTGCGGGCATATCTGCGCCGCTCCGTGCCACGAAGGCAAGTGTCCAGATATGCCTTGCAAAGAGATGGTTAAGGTTACGTGCCAGTGCGGGCATAGGACAATGAGTCGTGTATGCGCCGATAATGCGCGGGAATATCAGAGGATAGCGAGCAACATATTGGCTAGTAAGATGGCCGATATGCAGCTCGGTCATTCCGTCGATTTAGAAGAAGTGTTTGGGCAAGGCGCGAAAAAGCAGAATCAGTGGAAGACTTTGGAATGCAACGACGAGTGCAAGATAATAGAAAGAAACAGGAGACTTGCATTGGGACTGCAGATTGTCAATCCGGATTTAAGTGGCAAACTGATGCCCAGATACACCGATTACATGAAACAATGGGCCAAGAAAGATCCGCATTTCTGCCAAACGGTCCATGAGAAGTTGACGGAGTTAGTGCAGCTGGCGAAAATATCCAAGCAGAAGTCTCGAAGTTATTCGTTTGATGTTATGAACAGAGAAAAGCGTCATTTCGTGCATGAGTCGTGCCAGCATTTCGGCTGTGAGAGTCAAGCTTACGATAAGGAGCCAAAGAGAAACGTCGTTGCTACTGCCGTAAAAGATAAGTGTTGGCTACCAAGTTATAGTTTACTAGAAATGATACAAAGAGAGAAGGGGCAAAGAAAGGTTCCAGGTCCGGTACTTAATGCTTCGAAGGGTAATAATTCTACAAAGACTGTTCTTTCATTACCTGTAAAACAGAATCAGCAATTGCTGCCATCATCGTCAACTGCTAAAACGGGTGACAAAGAAATAGATTATTTTGATTATCGAGGAAATCAGTAA
- Protein Sequence
- SNSQESKAVVEESQEDDSSSMYEGNDSENMSSKIPEAQRNGRPKRFANASNYQYKYNLDDMQSEPSARRKTATTAKYAPRRNNETTASYKERKAENWRDRAESNETARTPQGKNLRKKYDFDDDASQRERLTEQLNKGTLECLVCYEHIKQSDYVWSCNNCYHVLHLKCIKKWAKSSQSENNIWKCPACRDVSFLVPEDYFCFCRKMKMPEWNRRGVAHSCGEICGRHLSKKNCTHKCTLLCHPGSCPQCIAMVTKYCGCGRTSKMLLCSTHQLLICDSICGKDLSCGKHTCQRKCHQGECGPCDKVVRQTCFCSKKTQEVPCRANVADTYSCDNICNKPLDCEKHYCQKVCHPEACDPCSLTPERVTMCCCGQTPLTEKRESCMDPVPTCDKICSKRLKCGQPSNPHICKAPCHVGQCSECDLNTDVKCRCGNMDREIACRDLTSKADDARCEKRCKKKRSCGKHNCNQSCCIDIEHICPLPCSKTLSCGRHKCQERCHMGRCSPCWESSFEELYCECGAEVIYPPVLCGTRRPACNRPCSREHVCDHEVLHNCHSEPSCPPCSVLTQRWCHGKHELRKAVPCHVKEISCGLPCNKPLACGRHKCITMCHAGSCERPRQQCTQPCITMRELCGHICAAPCHEGKCPDMPCKEMVKVTCQCGHRTMSRVCADNAREYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQWKTLECNDECKIIERNRRLALGLQIVNPDLSGKLMPRYTDYMKQWAKKDPHFCQTVHEKLTELVQLAKISKQKSRSYSFDVMNREKRHFVHESCQHFGCESQAYDKEPKRNVVATAVKDKCWLPSYSLLEMIQREKGQRKVPGPVLNASKGNNSTKTVLSLPVKQNQQLLPSSSTAKTGDKEIDYFDYRGNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -