Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00016 0.018 16.0 3.9 1 22 63 84 63 84 0.96

2 7 0.0024 0.27 12.2 1.1 2 21 97 117 96 118 0.94

3 7 0.044 4.9 8.3 4.8 1 23 126 149 126 149 0.93

4 7 3e-05 0.0034 18.2 1.2 2 21 198 217 197 218 0.95

5 7 0.023 2.6 9.1 0.4 1 23 226 249 226 249 0.95

6 7 0.00018 0.02 15.8 0.1 1 22 278 299 278 299 0.94

7 7 0.00011 0.013 16.4 2.6 3 23 309 330 307 330 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00016	0.018	16.0	3.9	1	22	63	84	63	84	0.96
2	7	0.0024	0.27	12.2	1.1	2	21	97	117	96	118	0.94
3	7	0.044	4.9	8.3	4.8	1	23	126	149	126	149	0.93
4	7	3e-05	0.0034	18.2	1.2	2	21	198	217	197	218	0.95
5	7	0.023	2.6	9.1	0.4	1	23	226	249	226	249	0.95
6	7	0.00018	0.02	15.8	0.1	1	22	278	299	278	299	0.94
7	7	0.00011	0.013	16.4	2.6	3	23	309	330	307	330	0.95

Coding Sequence: AACGAACCCAAATTTTCGGAACCCTCGAAGTCGCCGATGTCACCCGTCGCGATTGATCTCACCACCAATCCTCAGTTCAACGGCCTTTATCCACTGGATCAGTCGATCTCCTCCGGGGTCGTGCCTGTAGCGCCTGTAACGTCTGTACCGCAAAACTCGGACATCGGTCCGCAGACTCGCAAGACGTTCGTGTGCTCCAATTGCGGCAAGTGCCTGTCTCACAAATACACCCTGGATCGCCATCGCAATACCGTCTGCGGTAAGGTCCGCAACACCACCGGCAAGTGGAAGTGTAAGCGTGGTTGCAAAAGGAGGTACGAATCCCAGGGGAGCCTGTCGCGCCATTACAAATTCGAGTGTGGTGTGAAGCGCCAGTTTCGCTGCATCTTCTGCGAAAGCGAGTTCACCCAACAATGCAGCCTGAACAGACATCTGAAGAAAAAGCACCCCGAGGAAAATAACTACAATGTCGCGTTAACGGATTGTTATAAGTACCAAGCCGGGCGGGGTGCAATCGCGCAAGAAGCCAAGCTGCGATTCTTCTGCGATGGATTGCCGCGAGACATTTGGAGACGCTGCAAGGACGAGCTGCGGTGTCTGAAGTGCACGAAACGATACAGCGACTGGCGCAGCCTGCGGAAGCACATGAACTTCTTCTGCCAGATGGAACCGCTCTATCCTTGCCCGTACTGCTCCCACAGGGCCAGGATACCCACCCTGTTGAAGTATCACATTGTTCGCGAGCATATAGCCCACGTGTCGATCGAGGAGATGCGATTCGGTTCGGCGCAGCAATCCGAGGATTACGGGGAATACATGGGCAAGCCCACCTTTGTGTGCCCGAAGTGTGGAAAGGGTTACGCCTGGAAGGCGAGTCTTCAGCGTCACCTGAGCACCGTATGCGGCACGCCGCCCATGCTCTTCTGCAATCTCTGCGGATACAAGACCAGCCGCAAGGACGTTCTCTTCAGGCATATGCGGCACGTGCACCCGAGATCACAGTAG
Protein Sequence: NEPKFSEPSKSPMSPVAIDLTTNPQFNGLYPLDQSISSGVVPVAPVTSVPQNSDIGPQTRKTFVCSNCGKCLSHKYTLDRHRNTVCGKVRNTTGKWKCKRGCKRRYESQGSLSRHYKFECGVKRQFRCIFCESEFTQQCSLNRHLKKKHPEENNYNVALTDCYKYQAGRGAIAQEAKLRFFCDGLPRDIWRRCKDELRCLKCTKRYSDWRSLRKHMNFFCQMEPLYPCPYCSHRARIPTLLKYHIVREHIAHVSIEEMRFGSAQQSEDYGEYMGKPTFVCPKCGKGYAWKASLQRHLSTVCGTPPMLFCNLCGYKTSRKDVLFRHMRHVHPRSQ

Sequence clustering based on sequence similarity using MMseqs2