Basic Information

Insect: Aphaenogaster picea
Gene Symbol: -
Assembly: GCA_003063865.1
Location: NJRM01000121.1:393124-397144[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1e-05 0.0013 19.5 2.4 1 23 169 191 169 191 0.98

2 8 0.00027 0.03 15.2 0.4 1 23 223 246 223 246 0.93

3 8 7.5e-05 0.0085 17.0 2.6 1 23 346 368 346 368 0.97

4 8 1e-05 0.0012 19.7 0.1 1 23 374 396 374 396 0.98

5 8 1.2e-06 0.00014 22.6 1.7 1 23 402 424 402 424 0.98

6 8 3.9e-07 4.4e-05 24.2 1.9 1 23 430 452 430 452 0.99

7 8 4e-06 0.00045 21.0 1.0 1 23 458 480 458 480 0.98

8 8 3.9e-05 0.0043 17.9 0.6 1 23 486 508 486 508 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1e-05	0.0013	19.5	2.4	1	23	169	191	169	191	0.98
2	8	0.00027	0.03	15.2	0.4	1	23	223	246	223	246	0.93
3	8	7.5e-05	0.0085	17.0	2.6	1	23	346	368	346	368	0.97
4	8	1e-05	0.0012	19.7	0.1	1	23	374	396	374	396	0.98
5	8	1.2e-06	0.00014	22.6	1.7	1	23	402	424	402	424	0.98
6	8	3.9e-07	4.4e-05	24.2	1.9	1	23	430	452	430	452	0.99
7	8	4e-06	0.00045	21.0	1.0	1	23	458	480	458	480	0.98
8	8	3.9e-05	0.0043	17.9	0.6	1	23	486	508	486	508	0.97

Sequence Information

Coding Sequence: ATGGCCCTAGAATCAAATGGCAACAACGTGGTGTGGTTGAACACAACCCGTCCTGATCAGATACAGCAGAGTCAACCGATCGAGCAGCCATTGAAGTGTTCCATGTTTACTCAAACGGAACAAACTAATAGTTTTACCCAGACGGAACAGAGCAATTCGAGTTACGGAGATCAGAGACAGCAGCAAACAGCAATGTTTGACCCACAGCAGATTCAGCAGCAACAGGCTGCTGCGCAGGGTCAACAGTCGCAGCAGCAGCAGACTCAGCAGATGTATGTTACGGACAAGAAGGAGGACAAGtctcagcagcagcaacagacCACTACTGCCGagtttccttcttccttctacTACAACGTCAACATGTTGCAGAAGGTTCAGACAAACGCGGTGAGCACAATCAGTGCAATCACCGACGATAAAGGTTGTTACCGTTTCGATGTTCAACCTGTCGGTTATAATACATTGCTAAACCAGATGAGCATTGCCGCCGCCAATGCGACCTTCAAGTGTGACATTTGCGGGTTGGTCTTCGGCCACATGAGTCTGCTGCAACATCATAAGCGGATTCACAACACAACGCCCAGCAATTTGCAGCAACAGCCGCAGCAGATTGTGGTGCAAACGCCGACAACAGTGACTGTCGCCACCACGCCGGATAGACCGTACACTTGTGACGTTTGTGGAGCGTGTTTTGCATTACCGGGAGAATTAAAAAGTCACAAAACAAACATGCATCAGAAACCTAAGGTGCAAATTTGTGAAGATTGTGGCAGTGAGGACCCATGCGAACATCATCCAACTAAAGTTAAAAAGACTATCAAGCCTGGTCATCATCCTGTGAAACGAAGGGGTGTCACTAGCGTCACCAAATGTCACAAATGCAACGGCACGGGGATTATTTTTATTGGTAAACACGACGAAAAACTAGATTCCGGAATCAGTTCCCTCGCAAAGTGTGGCGGCTGCAAGGCTACAGGCCGCATCGTCATAGGAAGTGGCAAGCAAAACAGTCAAAATCAGGCGGAAAAACCATTTCATTGTAACGTTTGTGATGGTACATTCTCTCGATACTCTTCACTCTGGTCCCATAAAAGACTTCATTCGGGAGACAAACCATTCAAATGTGATGTCTGTGGTTTAGCCTTTGCAAAGGCTGCCTATTTGAAGAATCATGGAAGAGTTCACACCGGTGAGAAACCATTCAAATGCAACGTATGCGGCATGCAATTTTCGCAGAGCCCGCACTTAAAAAATCACGAGCGAATTCATTCCGGCGAGCGACCCTATCAGTGTGAGGTTTGCGAAAAGACGTTCGCCAGACACTCGACGCTCTGGAATCACAGAAGAATTCACACCGGCGAGAAACCGTATAGGTGTAACATCTGCGGTTCCGCCTTCAATCAAGCCACGCATCTCAAAAATCACGCAAAAGTCCATACCGGTGAAAAGCCGCATAGGTGCGATATATGCGAGATCGGCTTTTCCGATCGTTTCGCGCTGAAGCGTCACCGTGCGATCCACGAGAAGTATGGCCAGACAGCGCGAAATCAGAATTCGAATAACCCGGCGAACGCACAGCAGGCCAACGCGAGTagtcagcagcagcagcagcagtcgcagcagcagcaacaaccaCAACAGACGCAGCAAGGACAGGTCGTGGTCGTGAATGCGACCACTCCTGTCACTGTCAGCCAAGGGCAAGGCCAAGTTATACTCGACGAGGTCTACAAGTGTCAGGTGGCCTTCCCAGAGCCTAAATGA
Protein Sequence: MALESNGNNVVWLNTTRPDQIQQSQPIEQPLKCSMFTQTEQTNSFTQTEQSNSSYGDQRQQQTAMFDPQQIQQQQAAAQGQQSQQQQTQQMYVTDKKEDKSQQQQQTTTAEFPSSFYYNVNMLQKVQTNAVSTISAITDDKGCYRFDVQPVGYNTLLNQMSIAAANATFKCDICGLVFGHMSLLQHHKRIHNTTPSNLQQQPQQIVVQTPTTVTVATTPDRPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKVKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHDEKLDSGISSLAKCGGCKATGRIVIGSGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCDVCGLAFAKAAYLKNHGRVHTGEKPFKCNVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNSNNPANAQQANASSQQQQQQSQQQQQPQQTQQGQVVVVNATTPVTVSQGQGQVILDEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01271435;
90% Identity: iTF_01520492;
80% Identity: iTF_00126947;